Glyma05g32600 - SoyBase

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Report for Sequence Feature Glyma05g32600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37491881
stop:	37497971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33470	AT	Annotation by Michelle Graham. TAIR10: histone deacetylase 14 \| chr4:16102774-16105439 REVERSE LENGTH=423	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process	SoyBase	N/A	ISS
GO:0090042	GO-bp	Annotation by Michelle Graham. GO Biological Process: tubulin deacetylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004407	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity	SoyBase	N/A	ISS
GO:0042903	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tubulin deacetylase activity	SoyBase	N/A	ISS
GO:0043014	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-tubulin binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
GO:0048487	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-tubulin binding	SoyBase	N/A	ISS
GO:0051721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein phosphatase 2A binding	SoyBase	N/A	ISS
KOG1342	KOG	Histone deacetylase complex, catalytic component RPD3	JGI		ISS
PTHR10625	Panther	HISTONE DEACETYLASE	JGI		ISS
PTHR10625:SF22	Panther	HISTONE DEACETYLASE-RELATED	JGI		ISS
PF00850	PFAM	Histone deacetylase domain	JGI		ISS
UniRef100_G7LE36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Medicago truncatula RepID=G7LE36_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7LE36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Histone deacetylase n=1 Tax=Medicago truncatula RepID=G7LE36_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g32600 not represented in the dataset	Glyma05g32600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g32600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g192600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32600

Limit To All Plant Sequences

>Glyma05g32600.3   sequence type=transcript   gene model=Glyma05g32600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTACTGCCTACTGGTGAAGTTAATCTTGCTTCTCCAAATCCCAATCCCAATCCCAATCCCAACCTACAATTAGATAATCCACAAAAATTTTCTATAAAAGAAAAACTGAAAATTTGGCTGTGTGTGCCATTTGTCAAAGTTTGTGATAACTAATAACTGGAGTGTGGAGGTTGTGAGCAACTTTCACTGGTGTCGTCTGGTCTCCATGCACCTTCTCAAATTTCCTCGCTCTCCATCTTCCTTCGCATCATCAGGGAATGCGTTCTTTCTGGTGGGTCATCATGTTTTGGACATAAGAGTGTTCCGTAAGAACCAGAGATGTTTCAGAGCGTCCATATCGTGTTCGGCTGTTAGGAACGGTTCTATTGAGCAACTAAGTGATGCACGGCTTATATACTCCGTCGCTCCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCCGCGATTGTCAATGCTCTAGAAGAAATGCAGCTCACTTCCAAGTTCCGTGGCCCAGAGGTAATTGAACTTCAACATTTTGAGCCTGCTTCAGTTGATGATATTGCAAGTGTGCATGCAAGAGCCTATGTTTCTGGGCTTGAAAAGGTTATGGATCAAGCTGTGGAGAAAGGCCTTATTTTCCTTGATGGTTCAGGACCAACATATGCCACTGCCACTACCTTCCAGGAGTCAATAGTTGCAGCCGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCATGTTCAAAGATAAAGGGAGATGCACCCACTGGTTTTGCTCTGATAAGACCACCAGGACATCACGCAGTTCCACAAGGACCTATGGGATTCTGCATTTTTGGAAATGTGGCCATTGCAGCCCGTTATTCTCAGCGTGTTCATGGATTGAAGCGTGTGTTTATAATTGACTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGATGTATTTTTCCTTTCATTTCACCAAGATGGAAGCTATCCCGGTACTGGTAAATTTGATGAAGTTGGAAGTGGAGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGTTCAGGTGATACTGCTATTAGAACTGTGTTCGATGAAGTCATTGTACCATGTGCTCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGCCACGTGTTGGATCCACTAGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCGTCCAGTATCAAACAACTAGCGAAAGATTTATGTGGGGGCCGATGTGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTTTCATATTCCGTGGCAGACACATTCCGTGCTCTTCTTGGGGACCGAAGCTTGGCATCTGAGTTTGATAACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCTATTCAGAAGATAAAACACATTCATTCCCTGTGAGGTCAAAATAGAAACTGACATGACAAGCATCTAAATGTCTAGCATTAATAATTTCCTTTTCTGTGGGTTCAATCTATAAGTACATGTCTTTACACTCTTGGGTGGGCATTCTCCCACTTATCACATAGAAGCAAAACCATTGTACAGGATTGCTTGTGGTCTTTGAACGAGTCTCCAGTTACAGTTTCTATATGCCATGCAGCCATATTGATCATGTGGTCATAGCCATATACATAAAGGAGTAAACCCTAATTTTATATATTTACTTCATTGAGGAACACTAGCAACACAATTTTTAACACACTCTTATTAGCACATTCTCTCTATCAAATGAAACCCATGTAAGTCTCACCAAATGATGCATGCCTCGTAATTTTTTTTAATGGGTTTCACTTTCCATTTCGTGAGTCATATGTAGCTTTTACCCAATAATAAAGAGTTGAATGCATTAATAGGATCTCTAAGAACTACCGAACATGTTACTTGTGGGAGAATTTTTATAATGCCATTCTTTGTAGATTCAATAGTGGCATTTACTGTGTCTGTGTTGTAGGAATCTGCTACTTGAGCCTTGTTAGATAGATCAAAAGCCTCCTCCTATTGGGCTAGGTGGGTGTATCAATTATCATGTATGTTAGCTTCTTTGATTTTTTTTTTTATTATCAGCAAATCAAAATATATTAAATAGATGACCACCTGGCTAATCTCAATCCCCGGCTTCTTTTACTTGCTTTTGCTTTCATATGCACCTGCCTCCCTTGTCATTCCAATAACAAGTAAGAGTTCATAATTTGTAGTAGTAGTTTG

Coding sequences of Glyma05g32600

Limit To All Plant Sequences

>Glyma05g32600.1   sequence type=CDS   gene model=Glyma05g32600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCTTCTCAAATTTCCTCGCTCTCCATCTTCCTTCGGGAATGCGTTCTTTCTGGTGGGTCATCATGTTTTGGACATAAGAGTGTTCCGTAAGAACCAGAGATGTTTCAGAGCGTCCATATCGTGTTCGGCTGTTAGGAACGGTTCTATTGAGCAACTAAGTGATGCACGGCTTATATACTCCGTCGCTCCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCCGCGATTGTCAATGCTCTAGAAGAAATGCAGCTCACTTCCAAGTTCCGTGGCCCAGAGGTAATTGAACTTCAACATTTTGAGCCTGCTTCAGTTGATGATATTGCAAGTGTGCATGCAAGAGCCTATGTTTCTGGGCTTGAAAAGGTTATGGATCAAGCTGTGGAGAAAGGCCTTATTTTCCTTGATGGTTCAGGACCAACATATGCCACTGCCACTACCTTCCAGGAGTCAATAGTTGCAGCCGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCATGTTCAAAGATAAAGGGAGATGCACCCACTGGTTTTGCTCTGATAAGACCACCAGGACATCACGCAGTTCCACAAGGACCTATGGGATTCTGCATTTTTGGAAATGTGGCCATTGCAGCCCGTTATTCTCAGCGTGTTCATGGATTGAAGCGTGTGTTTATAATTGACTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGATGTATTTTTCCTTTCATTTCACCAAGATGGAAGCTATCCCGGTACTGGTAAATTTGATGAAGTTGGAAGTGGAGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGTTCAGGTGATACTGCTATTAGAACTGTGTTCGATGAAGTCATTGTACCATGTGCTCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGCCACGTGTTGGATCCACTAGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCGTCCAGTATCAAACAACTAGCGAAAGATTTATGTGGGGGCCGATGTGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTTTCATATTCCGTGGCAGACACATTCCGTGCTCTTCTTGGGGACCGAAGCTTGGCATCTGAGTTTGATAACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCTATTCAGAAGATAAAACACATTCATTCCCTGTGA

>Glyma05g32600.3   sequence type=CDS   gene model=Glyma05g32600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCTTCTCAAATTTCCTCGCTCTCCATCTTCCTTCGCATCATCAGGGAATGCGTTCTTTCTGGTGGGTCATCATGTTTTGGACATAAGAGTGTTCCGTAAGAACCAGAGATGTTTCAGAGCGTCCATATCGTGTTCGGCTGTTAGGAACGGTTCTATTGAGCAACTAAGTGATGCACGGCTTATATACTCCGTCGCTCCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCCGCGATTGTCAATGCTCTAGAAGAAATGCAGCTCACTTCCAAGTTCCGTGGCCCAGAGGTAATTGAACTTCAACATTTTGAGCCTGCTTCAGTTGATGATATTGCAAGTGTGCATGCAAGAGCCTATGTTTCTGGGCTTGAAAAGGTTATGGATCAAGCTGTGGAGAAAGGCCTTATTTTCCTTGATGGTTCAGGACCAACATATGCCACTGCCACTACCTTCCAGGAGTCAATAGTTGCAGCCGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCATGTTCAAAGATAAAGGGAGATGCACCCACTGGTTTTGCTCTGATAAGACCACCAGGACATCACGCAGTTCCACAAGGACCTATGGGATTCTGCATTTTTGGAAATGTGGCCATTGCAGCCCGTTATTCTCAGCGTGTTCATGGATTGAAGCGTGTGTTTATAATTGACTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGATGTATTTTTCCTTTCATTTCACCAAGATGGAAGCTATCCCGGTACTGGTAAATTTGATGAAGTTGGAAGTGGAGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGTTCAGGTGATACTGCTATTAGAACTGTGTTCGATGAAGTCATTGTACCATGTGCTCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGCCACGTGTTGGATCCACTAGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCGTCCAGTATCAAACAACTAGCGAAAGATTTATGTGGGGGCCGATGTGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTTTCATATTCCGTGGCAGACACATTCCGTGCTCTTCTTGGGGACCGAAGCTTGGCATCTGAGTTTGATAACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCTATTCAGAAGATAAAACACATTCATTCCCTGTGA

Predicted protein sequences of Glyma05g32600

Limit To All Plant Sequences

>Glyma05g32600.1   sequence type=predicted peptide   gene model=Glyma05g32600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLLKFPRSPSSFGNAFFLVGHHVLDIRVFRKNQRCFRASISCSAVRNGSIEQLSDARLIYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLTSKFRGPEVIELQHFEPASVDDIASVHARAYVSGLEKVMDQAVEKGLIFLDGSGPTYATATTFQESIVAAGAGLALVDSVVACSKIKGDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARYSQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDNPNILYEEPSTKVKQAIQKIKHIHSL*

>Glyma05g32600.3   sequence type=predicted peptide   gene model=Glyma05g32600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLLKFPRSPSSFASSGNAFFLVGHHVLDIRVFRKNQRCFRASISCSAVRNGSIEQLSDARLIYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLTSKFRGPEVIELQHFEPASVDDIASVHARAYVSGLEKVMDQAVEKGLIFLDGSGPTYATATTFQESIVAAGAGLALVDSVVACSKIKGDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARYSQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDNPNILYEEPSTKVKQAIQKIKHIHSL*

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