Glyma05g32530 - SoyBase

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Report for Sequence Feature Glyma05g32530

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37457988
stop:	37461237
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6T0L9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0L9_SOYBN	SoyBase	E_val: 2.00E-167	ISS
UniRef100_Q2QWN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QWN1_ORYSJ	SoyBase	E_val: 3.00E-69	ISS

Expression Patterns of Glyma05g32530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g32530 not represented in the dataset	Glyma05g32530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32530

Paralog	Evidence	Comments
Glyma08g16685	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g191900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32530

Limit To All Plant Sequences

>Glyma05g32530.2   sequence type=transcript   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAATATTTGATAAGGAGGTCCAAAATATCTCATCTAAATCTAACACATCCCTTACAAAACACATGAGAATGTGAGGTAGCTGAACTCTGAACTGAAATCCTCAGCAGTTAGTTCAGTTATGGTTGCAGAGATTCCTTTCAAACACAAAAGAACCTCAGATTTTGGTTCCTAATTGACAACCATGGCGGGTGCGTGCAGAGCACCCATTTGCCATCTTCCTCCGCAGAAGCCCAAAACCAGAATCCAGAATTCTCACAGCAGAAGAGCTCAACTTCCAAATAGGCGTTTGTTCCTCTTCTCTCTGCCTCTCTCTAGTTTCCTTCTCCTTCCTGTTCCAAGCTTTGGTGATGGTAACAATGCAATCATTATTGATAAACTTCAAAGTGGGCCATCTTCATTTGCTGCCACAATGTATGACCCAGTAAGTGCGGCTGAAAGAGAAGCAAGTGCTTTGGTTTCAGAGAGAGTGTCTCAGGCAGTGGAGTTGCTGGAGAAAGGGAGGGAATTGCAGACTCAGGGTGACTTTAGTGGTGCTCTTGATTACTTTTCTAAGGTTATTGAAAGCTACAAAGACTTAGCATTCTCAGAATATGCAAGGGTAGGAAGAGCATTGGCCCTATATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGGTATCCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCACTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTCAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTATCTTAAGACCTCACAGGATATTTATACGTTTTGTTTATCCCATACTAAGCAGTGCTAGCTATATGACGACTTCGAAGGTATCTCTCAAAATTTGTGACAATGTTTCCTATTCAGAAGCTAGATTGCTCAACTCTAACACTAAATTG

>Glyma05g32530.3   sequence type=transcript   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAATATTTGATAAGGAGGTCCAAAATATCTCATCTAAATCTAACACATCCCTTACAAAACACATGAGAATGTGAGGTAGCTGAACTCTGAACTGAAATCCTCAGCAGTTAGTTCAGTTATGGTTGCAGAGATTCCTTTCAAACACAAAAGAACCTCAGATTTTGGTTCCTAATTGACAACCATGGCGGGTGCGTGCAGAGCACCCATTTGCCATCTTCCTCCGCAGAAGCCCAAAACCAGAATCCAGAATTCTCACAGCAGAAGAGCTCAACTTCCAAATAGGCGTTTGTTCCTCTTCTCTCTGCCTCTCTCTAGTTTCCTTCTCCTTCCTGTTCCAAGCTTTGGTGATGGTAACAATGCAATCATTATTGATAAACTTCAAAGTGGGCCATCTTCATTTGCTGCCACAATGTATGACCCAGTAAGTGCGGCTGAAAGAGAAGCAAGTGCTTTGGTTTCAGAGAGAGTGTCTCAGGCAGTGGAGTTGCTGGAGAAAGGGAGGGAATTGCAGACTCAGGGTGACTTTAGTGGTGCTCTTGATTACTTTTCTAAGGTTATTGAAAGCTACAAAGACTTAGCATTCTCAGAATATGCAAGGGTAGGAAGAGCATTGGCCCTATATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGGTATCCAGAAATACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCACTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTCAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTATCTTAAGACCTCACAGGATATTTATACGTTTTGTTTATCCCATACTAAGCAGTGCTAGCTATATGACGACTTCGAAGGTATCTCTCAAAATTTGTGACAATGTTTCCTATTCAGAAGCTAGATTGCTCAACTCTAACACTAAATTGTTGTAATATTGAAATAAGCTTTCAATCGAAAATTTTGTGCTTGTATGAATTCTAAGCCATTCAGGGAGTGTTAATAAGGTATCATCTCCTTTTTTCCCCCTTTTTCGCTGCCAACTGACCTTGAAACGTGATTGAAATGAACATCAATGATAAACCCTTCCACCTTTTTCTTATGTTATATAACTTTTTCTGATGTTGAATAAGCCATGGTATTTGTCCTCTTGGCTTCTTCCCTAATTAATGTCTACTCACATTAAGAAAACTGCCTTAAGGGTACAGATCATCCCGTTCTAGTAATTATAGTTAGGTTTATTGTCTGCATGAAATTCTTTATATTATCATCTAATGATAAGTCAGAGACATTATTTCAAATGTTAGATATA

Coding sequences of Glyma05g32530

Limit To All Plant Sequences

>Glyma05g32530.1   sequence type=CDS   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGTGCGTGCAGAGCACCCATTTGCCATCTTCCTCCGCAGAAGCCCAAAACCAGAATCCAGAATTCTCACAGCAGAAGAGCTCAACTTCCAAATAGGCGTTTGTTCCTCTTCTCTCTGCCTCTCTCTAGTTTCCTTCTCCTTCCTGTTCCAAGCTTTGGTGATGGTAACAATGCAATCATTATTGATAAACTTCAAAGTGGGCCATCTTCATTTGCTGCCACAATGTATGACCCAGTAAGTGCGGCTGAAAGAGAAGCAAGTGCTTTGGTTTCAGAGAGAGTGTCTCAGGCAGTGGAGTTGCTGGAGAAAGGGAGGGAATTGCAGACTCAGGGTGACTTTAGTGGTGCTCTTGATTACTTTTCTAAGGTTATTGAAAGCTACAAAGACTTAGCATTCTCAGAATATGCAAGGGTAGGAAGAGCATTGGCCCTATATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGGTATCCAGAAATACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCACTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTCAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTATCTTAA

>Glyma05g32530.2   sequence type=CDS   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGTGCGTGCAGAGCACCCATTTGCCATCTTCCTCCGCAGAAGCCCAAAACCAGAATCCAGAATTCTCACAGCAGAAGAGCTCAACTTCCAAATAGGCGTTTGTTCCTCTTCTCTCTGCCTCTCTCTAGTTTCCTTCTCCTTCCTGTTCCAAGCTTTGGTGATGGTAACAATGCAATCATTATTGATAAACTTCAAAGTGGGCCATCTTCATTTGCTGCCACAATGTATGACCCAGTAAGTGCGGCTGAAAGAGAAGCAAGTGCTTTGGTTTCAGAGAGAGTGTCTCAGGCAGTGGAGTTGCTGGAGAAAGGGAGGGAATTGCAGACTCAGGGTGACTTTAGTGGTGCTCTTGATTACTTTTCTAAGGTTATTGAAAGCTACAAAGACTTAGCATTCTCAGAATATGCAAGGGTAGGAAGAGCATTGGCCCTATATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGGTATCCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCACTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTCAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTATCTTAA

>Glyma05g32530.3   sequence type=CDS   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGTGCGTGCAGAGCACCCATTTGCCATCTTCCTCCGCAGAAGCCCAAAACCAGAATCCAGAATTCTCACAGCAGAAGAGCTCAACTTCCAAATAGGCGTTTGTTCCTCTTCTCTCTGCCTCTCTCTAGTTTCCTTCTCCTTCCTGTTCCAAGCTTTGGTGATGGTAACAATGCAATCATTATTGATAAACTTCAAAGTGGGCCATCTTCATTTGCTGCCACAATGTATGACCCAGTAAGTGCGGCTGAAAGAGAAGCAAGTGCTTTGGTTTCAGAGAGAGTGTCTCAGGCAGTGGAGTTGCTGGAGAAAGGGAGGGAATTGCAGACTCAGGGTGACTTTAGTGGTGCTCTTGATTACTTTTCTAAGGTTATTGAAAGCTACAAAGACTTAGCATTCTCAGAATATGCAAGGGTAGGAAGAGCATTGGCCCTATATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGGTATCCAGAAATACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCACTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTCAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTATCTTAA

Predicted protein sequences of Glyma05g32530

Limit To All Plant Sequences

>Glyma05g32530.1   sequence type=predicted peptide   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGACRAPICHLPPQKPKTRIQNSHSRRAQLPNRRLFLFSLPLSSFLLLPVPSFGDGNNAIIIDKLQSGPSSFAATMYDPVSAAEREASALVSERVSQAVELLEKGRELQTQGDFSGALDYFSKVIESYKDLAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEIHAALAAALYADKHATLLAENQFAIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS*

>Glyma05g32530.2   sequence type=predicted peptide   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGACRAPICHLPPQKPKTRIQNSHSRRAQLPNRRLFLFSLPLSSFLLLPVPSFGDGNNAIIIDKLQSGPSSFAATMYDPVSAAEREASALVSERVSQAVELLEKGRELQTQGDFSGALDYFSKVIESYKDLAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPALAAALYADKHATLLAENQFAIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS*

>Glyma05g32530.3   sequence type=predicted peptide   gene model=Glyma05g32530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGACRAPICHLPPQKPKTRIQNSHSRRAQLPNRRLFLFSLPLSSFLLLPVPSFGDGNNAIIIDKLQSGPSSFAATMYDPVSAAEREASALVSERVSQAVELLEKGRELQTQGDFSGALDYFSKVIESYKDLAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEIHAALAAALYADKHATLLAENQFAIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS*

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