Glyma05g32450 - SoyBase

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Report for Sequence Feature Glyma05g32450

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37386524
stop:	37390309
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR11601	Panther	CYSTEINE DESULFURYLASE	JGI		ISS
PTHR11601:SF13	Panther	NITROGEN FIXATION PROTEIN-RELATED	JGI		ISS
PF00266	PFAM	Aminotransferase class-V	JGI		ISS
UniRef100_G7LE12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7LE12_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7LE12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7LE12_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32450

Paralog	Evidence	Comments
Glyma08g16610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g191100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g32450

Limit To All Plant Sequences

>Glyma05g32450.2   sequence type=CDS   gene model=Glyma05g32450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTAGTAGAGCACCCCTTATTAGCCGAACCATGCATGGACCAAAGCGTGGACAAAACCAACTACGAGGTTGGAGTGTTATCCAAAACAAGCATATCAGAAACATCTCATGACTTTTGCAACCACTCTGAGTCCTTCAAGAAGCTCGTGGAGATGGGTTTGCCGTGTAATGAATCAGTGGAGGAAAAGCTGCATTGGTTGCGGTCACAAATCATTGGTAACGATGCAGAGTTCGATTCCCCATTTGGAAAACGAAAAGTTGTCTATGCTGATCACACTGCTTCAGGCCGCAGCCTTCACTACAATGAGAATTTCATCATCAAACACCTTCTTCCTTTCTATGGTAACACTCACACGTGCGACAGTTACGTGGGAAGCAGGACAACAAAAATGGTACACGAAGCAAGGGAGTACATTAAAAAATGTTTAGGTGGTGGAGAAGATGATGCACTCATATTATGTGGCTCGGGCACAACTGCAGCCATCAAGAGGCTGCAAGAAGTGATGGGAATCGCTGTGCCATCTGTTTTGAGGGAAAGGGTTTTGAAGAGCCTTGGCACAGAAGAAAGATGGGTGGTTTTTGTTGGACCTCATGAGCACCATTCAAACCTCCTTTCTTGGAGGCAAAGCTTGGCTGAGGTGGTAGAGATTGGTCTTGATCAAAAAGGGTTGCTTGATATTGATGCTCTAAAGCTACAACTTGAGGCCTATAGAGATACCAACCGACCCATGTTGGGATCTTTCTCTGCTTGTAGCAATGTCACTGGAATTTACTCAGATACACGAGCAATTGCCCAGCTTCTTCATAAGTACAAAGCCTTTGCATGCTTTGATTTTGCAGCCAGTGGTCCATACGTGGAGATTGACGTGAGGTCAGGTGAGAGTGATGGGTATGATGCTGTGTTCCTGAGTCCACATAAGTTTCTTGGTGGTCCTGACTCTCCCGGGGTGCTCCTCATGAATAAGGCCCTATACCTGCTAGGATCTTCACCACCGTCCACTTGTGGAGGTGGAACCGTGACTTATGTCAATGGCTTCAATGAACAGGATACATTATATTTGGAGAACATAGAGGAAAGGGAAACTGGAGGCACCCCTCCAATAATCCAGACAGTGACAGCAGCATTGGCATTTTGGGTGAAGGAATACATAAGCTATGAAGAGATTGAAAAACGGGAACAACTGTACATTAACAAGGCATTCGAGAGGTTTGGTTCAAACCCCAACATTGAGGTTCTAGGAAACTTAAAGGCCAAGAGACAAGCCATATTGTCCTTTCTGATATACTCTACCACCACCAACTCTTCCTCAGCTGGTGAGTGGAGTGATGGTAACAAAGAAAATGAAGGGGAGCTTGATTTGTGGGCAGAAACGGGGAACCAAAGAGGTAAACCACTTCATGGCCCTTTTGTTGCAGCATTGCTCAATGACCTCTTTGGCATTCAAGCTCGAGGAGGGTGTGCTTGTGCTGGACCTTATGGCCACGAATTGCTCCACATCAACAAGTCTCAATCCCTTGCCATTAGATCAGCAGTTCAAGAGGGCTATATTGGAGTAAAGCCAGGGTGGACTCGAGTCAGTTTTCCATACTACATGAGTGAAGAAGATTTTGAGTACATTCTAAGAGCTATAGAGTTTTTAGCTGTGTATGGCCAACGATTCATTCCTCTGTATAGTTTCAATTTGATAAATGGCAGCTGGAGATTGAAGACAGAGAAATTTGAGGCACTAACCAAGGAAGACATGCGAAGGGACGAATCATACTTTGAGGTGGCTAAATGTGTTGCTAGTGGCCTCCCAAAATTCCCTTCTCAGGGTATACTCCAGGAGGATGTGGATCCCAATATCTTCTGCTTTAGAGTTTAA

Predicted protein sequences of Glyma05g32450

Limit To All Plant Sequences

>Glyma05g32450.2   sequence type=predicted peptide   gene model=Glyma05g32450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVEHPLLAEPCMDQSVDKTNYEVGVLSKTSISETSHDFCNHSESFKKLVEMGLPCNESVEEKLHWLRSQIIGNDAEFDSPFGKRKVVYADHTASGRSLHYNENFIIKHLLPFYGNTHTCDSYVGSRTTKMVHEAREYIKKCLGGGEDDALILCGSGTTAAIKRLQEVMGIAVPSVLRERVLKSLGTEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDQKGLLDIDALKLQLEAYRDTNRPMLGSFSACSNVTGIYSDTRAIAQLLHKYKAFACFDFAASGPYVEIDVRSGESDGYDAVFLSPHKFLGGPDSPGVLLMNKALYLLGSSPPSTCGGGTVTYVNGFNEQDTLYLENIEERETGGTPPIIQTVTAALAFWVKEYISYEEIEKREQLYINKAFERFGSNPNIEVLGNLKAKRQAILSFLIYSTTTNSSSAGEWSDGNKENEGELDLWAETGNQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLHINKSQSLAIRSAVQEGYIGVKPGWTRVSFPYYMSEEDFEYILRAIEFLAVYGQRFIPLYSFNLINGSWRLKTEKFEALTKEDMRRDESYFEVAKCVASGLPKFPSQGILQEDVDPNIFCFRV*

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