Report for Sequence Feature Glyma05g32320
Feature Type: gene_model
Chromosome: Gm05
Start: 37267372
stop: 37267900
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g32320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G26660 AT
Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 24 | chr3:9797136-9797610 REVERSE LENGTH=121
SoyBase E_val: 1.00E-39 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF03195 PFAM
Protein of unknown function DUF260
JGI ISS
UniRef100_G7K3J3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K3J3_MEDTR
SoyBase E_val: 1.00E-64 ISS
UniRef100_I1K4X1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K4X1_SOYBN
SoyBase E_val: 1.00E-73 ISS
Expression Patterns of Glyma05g32320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g32320
Paralog Evidence Comments
Glyma08g15591 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g32320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g189700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g32320
Coding sequences of Glyma05g32320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g32320.2 sequence type=CDS gene model=Glyma05g32320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CATATGTCTAGTAGGTGTGCAGCATGCAAGAATCAAACAAGAAAATGCTCTTCAGATTGCATTTTCTTTCCATATTTTCCTGCCAATGATCCTCAGAGATTTGCTTGTGTTCACAGAATCTATGGTGGCAGCAATGTTGGAAAAATGCTTCAGCAAATTCCACCATACTTACGTGAACAAGCTGCAAATACTTTGTATTTTGAAGCACAACGTAGGATTCAGGACCCTGTTTATGGATGTACTGGGATTATCTCTAAATTATATGAACAAATCAACAACACTGAAATTGCACTTGCGCATATCCAAACTCAAATTGCTTGTCTCAAGCTTCAAGTCCCACAGGAAAAAGCTGAGTCAAACTTCAATGTCTTGCGAGCACAAAGCAGCGGCACAACAGAGTTTCAATGGCAAAGTCAAGTTTGTTGGTTTAATTAA
Predicted protein sequences of Glyma05g32320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g32320.2 sequence type=predicted peptide gene model=Glyma05g32320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
HMSSRCAACKNQTRKCSSDCIFFPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQRRIQDPVYGCTGIISKLYEQINNTEIALAHIQTQIACLKLQVPQEKAESNFNVLRAQSSGTTEFQWQSQVCWFN*