Glyma05g32220 - SoyBase

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Report for Sequence Feature Glyma05g32220

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37162947
stop:	37166202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09810	AT	Annotation by Michelle Graham. TAIR10: actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010053	GO-bp	Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0676	KOG	Actin and related proteins	JGI		ISS
PTHR11937	Panther	ACTIN	JGI		ISS
PTHR11937:SF77	Panther	ACTIN	JGI		ISS
PF00022	PFAM	Actin	JGI		ISS
UniRef100_I1K4W1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4W1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SLQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin isoform B n=2 Tax=Fabaceae RepID=Q9SLQ6_MIMPU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g32220 not represented in the dataset	Glyma05g32220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32220

Paralog	Evidence	Comments
Glyma08g15480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g188800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32220

Limit To All Plant Sequences

>Glyma05g32220.2   sequence type=transcript   gene model=Glyma05g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACCCCTCAGTTTACAAAGTTTGATGAGCCTTTGTACACGGTTAGAGAAAACCGTTGTTACGCTCTCACGAACACACTCATACCCTCTGCTGCTCTCTCTCTGTATATATACCCCTTCACTTCTGTTCCAGCACCTTCCATTACTCCATTTCCATTCTCAACTGCGCGGTGAGTGAGTGAGAGACGGAAAGTGCAAAGCCACCGTCTTCTCTTCTCAGAGCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCATCTTTCTCATTCAAGGTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAAATATTTTTCGCACCAGTTGTTTTTATGGGTCTGTGTCATGTCATGTTAACGATATTGCCATGGATAAGAGGTGAGGAAGTATCATTAAAGGAGGGTCTATTCTTTAGCTTGATGCATCATATTTTGTGTGGGGGGCAGACAGTTAGAGAGAGGCATTTCTTGCGTTTGGCCATCCGTGGTTCATCTATATCTTCTTAGTAGGTTGTGTTGTAGCAAGGGAGTGATTGTGATGATCTCTTTTTCCCCCATTTTCTTTTTGTATTTTTAAAGTTTACATTTGAAGGATTTTTCCCCTTGGAACATTGAATCATTGATGTTAATAGTCATATGTATCGAGAAATCTCTATATTATTGTTATTTCCCGTTCTTGCTCGTAAATTCATACTGCAGTTTTTATGTATGTTGAATTATGTCCTAGAGACGGCATTAAGTCCATTTGATGAATGCATAGATCACTGTGTGATATTTTGTCGTTGATGTGTCATAAA

Coding sequences of Glyma05g32220

Limit To All Plant Sequences

>Glyma05g32220.1   sequence type=CDS   gene model=Glyma05g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA

>Glyma05g32220.2   sequence type=CDS   gene model=Glyma05g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA

Predicted protein sequences of Glyma05g32220

Limit To All Plant Sequences

>Glyma05g32220.1   sequence type=predicted peptide   gene model=Glyma05g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*

>Glyma05g32220.2   sequence type=predicted peptide   gene model=Glyma05g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*

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