Glyma05g32140 - SoyBase

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Report for Sequence Feature Glyma05g32140

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37108236
stop:	37111468
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09850	AT	Annotation by Michelle Graham. TAIR10: Transcription elongation factor (TFIIS) family protein \| chr5:3063488-3065221 REVERSE LENGTH=353	SoyBase	E_val: 9.00E-113	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR15141	Panther	ELONGIN A-RELATED	JGI		ISS
PTHR15141:SF34	Panther	TRANSCRIPTION ELONGATION FACTOR-RELATED	JGI		ISS
PF08711	PFAM	TFIIS helical bundle-like domain	JGI		ISS
UniRef100_E4MVW8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-06-O09 n=1 Tax=Eutrema halophilum RepID=E4MVW8_THEHA	SoyBase	E_val: 1.00E-111	ISS
UniRef100_I1K4V1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4V1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32140

Paralog	Evidence	Comments
Glyma08g15430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g187800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32140

Limit To All Plant Sequences

>Glyma05g32140.2   sequence type=transcript   gene model=Glyma05g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACACTACACACATCATGTACACCCGCCCAACCCAAACTCATTTCTCTCAATCCCTTCTCATATACTTTTAAATTAAATAATTTAACGTAAAACGAAATACTTATGACTTGAGACCATTTCATTCTCATCTCACTTCTCAATTTCTCTTCACCTTTTCTCCTTCCTTTTCTCTTGCCGCAAACAAAACAAACCACACGCGCATGAAAATAATAATTAATACTACTAATTCATTTCCTCAACATAAAAAAAAAAAAGAGTTTCGCGGAATATACTTTTCCTTTCCTTCTGTTCTGGTTAATTTCGTTTTTCCGTTTCGGAGATGGATTCGGAGGATTTTCGATCCATTCTGGAGAGTGCCGGCGTCGACGTTTGGGCCTTGATGGACGCCGCCATCGCGGTGGCCTCCGTCGACCACCCCGACGAGTTAAAGCGCCGGAGAGACAGAATCGTGGAGCGCCTTTACGCGAGTTCGGCGCTGCCGCAGTGTCGGAACTGTGACCCCAACGCCGGTGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGACCCTTACGGAGGCTTCATGGACGAGGAGCAGAAGAAGATTCTATACATTAAAGAGCAACTGGAAGACCCTCACCAGTCAGAAGATTCGTTAGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATCACATTCCCAGCGTTAGAGGAGTCTGACATTGGGAGGTATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTCAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGTCCCCGGGATACCCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCACCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCATCACAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCGTCGCCATCAGTCACTACTCCTGCTTCTCCTCCTCAAAACAGACAGAGAGAAGGCAATTTTGACCCGGATAGATTTGCTTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCGAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGAGTGGTGACCCATAATGTACGTGGCAACTTTCTTGTAAAAAGGCTTTTTATGGGTGGGTGATGCCGCATAGTCCTAAAAACCCGCTTGATCCCTTTACAATTTTACTCCCCAAAATAAAAATCCCTATGGTTTTATGTTTCCTTATTTAATATCAACCCCCGCTTTCCCCAACCAAAAAAAACCATAATATTTTATGTGCCAAACTATGATTTTTATGAAATGTGGGTGAGTTGCGGAGCACACATGATGATTTCAGCATCTTAATGAGGATGGTAGGGAGGGGAAATGATTTTTTTGGAGATCTAAACCATTGATTATTTTGGGTTGGAGCTTGAGGGTATGGTTAATGATTGATTTGGTGCTCCAGTAAGGATTGTTTAACTTGATTTTTGTCTTTGTTCTTAACTTGAGGCCATATCCAAAGCCAAGTCAAGAGTTGACTACTTTCTAGCTCTACTAATTTGCACGGGTGCGGGTCAGGGTCGTGGGGTAGTTTAGTTGGTGCCATGATCAATTATTGTCCGGCCTGGGACCTTAGTAACTGATCTTTCTGATCTCAACAAATGAAGTGGAGCGTATTTCAATTAATAATTCATGTGCGCATCATGTTCCCTTGCGTCAAAGTGTACGTTTTGGACTTTTTATTGTTTCGGTTGCTAACATCACCCGGGTCTGCAGCTGTTTCTTTTAGGAGGAACATGACATAGGTAGTTAAGGCCATACTTTCGTGGGATTCCAAAATTTTTGTAAATAATTTTTAAAAAATTAGTAATTAAGAATTGATACTAAATTAAAAATATTTTTGTTAAAATGTATTACTTTATTTTCAAACAATATATATTCTAGAATTTTAGGTGTCTTTCAACTGTAATTCACAGCATTAGTAGTTGTTTATTAGAT

Coding sequences of Glyma05g32140

Limit To All Plant Sequences

>Glyma05g32140.1   sequence type=CDS   gene model=Glyma05g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGAGGATTTTCGATCCATTCTGGAGAGTGCCGGCGTCGACGTTTGGGCCTTGATGGACGCCGCCATCGCGGTGGCCTCCGTCGACCACCCCGACGAGTTAAAGCGCCGGAGAGACAGAATCGTGGAGCGCCTTTACGCGAGTTCGGCGCTGCCGCAGTGTCGGAACTGTGACCCCAACGCCGGTGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGACCCTTACGGAGGCTTCATGGACGAGGAGCAGAAGAAGATTCTATACATTAAAGAGCAACTGGAAGACCCTCACCAGTCAGAAGATTCGTTAGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATCACATTCCCAGCGTTAGAGGAGTCTGACATTGGGAGGTATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTCAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGTCCCCGGGATACCCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCACCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCATCACAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCGTCGCCATCAGTCACTACTCCTGCTTCTCCTCCTCAAAACAGACAGAGAGAAGGCAATTTTGACCCGGATAGATTTGCTTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCGAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA

>Glyma05g32140.2   sequence type=CDS   gene model=Glyma05g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGAGGATTTTCGATCCATTCTGGAGAGTGCCGGCGTCGACGTTTGGGCCTTGATGGACGCCGCCATCGCGGTGGCCTCCGTCGACCACCCCGACGAGTTAAAGCGCCGGAGAGACAGAATCGTGGAGCGCCTTTACGCGAGTTCGGCGCTGCCGCAGTGTCGGAACTGTGACCCCAACGCCGGTGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGACCCTTACGGAGGCTTCATGGACGAGGAGCAGAAGAAGATTCTATACATTAAAGAGCAACTGGAAGACCCTCACCAGTCAGAAGATTCGTTAGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATCACATTCCCAGCGTTAGAGGAGTCTGACATTGGGAGGTATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTCAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGTCCCCGGGATACCCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCACCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCATCACAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCGTCGCCATCAGTCACTACTCCTGCTTCTCCTCCTCAAAACAGACAGAGAGAAGGCAATTTTGACCCGGATAGATTTGCTTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCGAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA

Predicted protein sequences of Glyma05g32140

Limit To All Plant Sequences

>Glyma05g32140.1   sequence type=predicted peptide   gene model=Glyma05g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSEDFRSILESAGVDVWALMDAAIAVASVDHPDELKRRRDRIVERLYASSALPQCRNCDPNAGEIRTQSSPSAEEEKDPYGGFMDEEQKKILYIKEQLEDPHQSEDSLVELLQNLADMDITFPALEESDIGRYVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKSPGYPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHNGSSGSSQRNNIEAERKPKAIPRKEAPPKPSPSVTTPASPPQNRQREGNFDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW*

>Glyma05g32140.2   sequence type=predicted peptide   gene model=Glyma05g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSEDFRSILESAGVDVWALMDAAIAVASVDHPDELKRRRDRIVERLYASSALPQCRNCDPNAGEIRTQSSPSAEEEKDPYGGFMDEEQKKILYIKEQLEDPHQSEDSLVELLQNLADMDITFPALEESDIGRYVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKSPGYPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHNGSSGSSQRNNIEAERKPKAIPRKEAPPKPSPSVTTPASPPQNRQREGNFDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW*

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