Glyma05g32080 - SoyBase

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Report for Sequence Feature Glyma05g32080

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37050667
stop:	37058786
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g32080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09880	AT	Annotation by Michelle Graham. TAIR10: Splicing factor, CC1-like \| chr5:3081646-3085179 REVERSE LENGTH=527	SoyBase	E_val: 0	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0147	KOG	Transcriptional coactivator CAPER (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF293	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7LC87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=3 Tax=Medicago truncatula RepID=G7LC87_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K4U5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4U5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g32080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g32080

Paralog	Evidence	Comments
Glyma08g15370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g32080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g187000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g32080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g32080

Limit To All Plant Sequences

>Glyma05g32080.2   sequence type=transcript   gene model=Glyma05g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATATGAATTAAAGCTTAGTCAGAAAAAATAAAATGAATTAAAGCTTCTATAATACTGTTACGAATACCGGAGGAAGCAACAGCTATTATCATCTGGAAAGACTGAAAGAGTAAAGAAAACCCTAAAACCCTAAAACCCTAGAAATTCAGAATTCAGCTGAAGAAGAAGGAGGAGGAGGAGGAACCAATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATAAAGACTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAAAGAGACCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAGGGATAGGGATAGGGATAGGAGAGACCGTGATAGGGACGGAGATAGGGAAAAGGAGCGCGAGAGAAGAGACAAGGATAAGGAGAGAGAGGGGGAAAAAGAGGCGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGTTAAGAAAGAGGCCTCAGAACCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGATTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGCAAGCCAAGATGCAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCGCAGACCCTGCAAGCATAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATCAGCTTGCCTATTGGTGCACCAGTTCTACCAACGCTAGTCATGCCTAATCCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGAGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACTTGAGATGGTTTGCACGCAGGTTAATTTCTGCTGTCTTCATGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGAAGTTCATACATGCCTCGAGGCTCCTGAAGATACAATATGCATTATTTTGTGGTCTTAGTTTTCATCCATTAAGTTCTAGTTTTTAGGATTCATGAATTGTATTAGATGTATGATTACAGAAATGATAATGTCCTGATGTTGGCGATATTTATGATCAGTTTTTGGGCTTTTTATGGAACTTCAATTATTTTCCTACGAAAACAATGTGAAAGTTTCTATTTTTTATACGATAAAG

Coding sequences of Glyma05g32080

Limit To All Plant Sequences

>Glyma05g32080.1   sequence type=CDS   gene model=Glyma05g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATAAAGACTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAAAGAGACCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAGGGATAGGGATAGGGATAGGAGAGACCGTGATAGGGACGGAGATAGGGAAAAGGAGCGCGAGAGAAGAGACAAGGATAAGGAGAGAGAGGGGGAAAAAGAGGCGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGTTAAGAAAGAGGCCTCAGAACCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGATTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGCAAGCCAAGATGCAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCGCAGACCCTGCAAGCATAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATCAGCTTGCCTATTGGTGCACCAGTTCTACCAACGCTAGTCATGCCTAATCCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGAGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACTTGAGATGGTTTGCACGCAGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGAAGTTCATACATGCCTCGAGGCTCCTGAAGATACAATATGCATTATTTTGTGGTCTTAG

>Glyma05g32080.2   sequence type=CDS   gene model=Glyma05g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATAAAGACTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAAAGAGACCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAGGGATAGGGATAGGGATAGGAGAGACCGTGATAGGGACGGAGATAGGGAAAAGGAGCGCGAGAGAAGAGACAAGGATAAGGAGAGAGAGGGGGAAAAAGAGGCGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGTTAAGAAAGAGGCCTCAGAACCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGATTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGCAAGCCAAGATGCAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCGCAGACCCTGCAAGCATAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATCAGCTTGCCTATTGGTGCACCAGTTCTACCAACGCTAGTCATGCCTAATCCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGAGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACTTGAGATGGTTTGCACGCAGGTTAATTTCTGCTGTCTTCATGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGA

Predicted protein sequences of Glyma05g32080

Limit To All Plant Sequences

>Glyma05g32080.1   sequence type=predicted peptide   gene model=Glyma05g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFDEYEYLEKTVEEDIDKDSSKKKKDITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENGGSKKDRDRDRERDRDRERSSGRHRSERERDGERKDRDKDRERRDKDKDKDRDRDRDRRDRDRDGDREKERERRDKDKEREGEKEARERSTRSRSRSERDRDRERDFEMRDGRRFRVKKEASEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDATAKSADLDDDEGGLTLNAHSRALLMQRLAGADPASIGLPVVNGSVPAQQAISLPIGAPVLPTLVMPNPVVEPVGNPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASAAQHAMHLRWFARSNQSCTKPSLKGKFEVHTCLEAPEDTICIILWS*

>Glyma05g32080.2   sequence type=predicted peptide   gene model=Glyma05g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFDEYEYLEKTVEEDIDKDSSKKKKDITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENGGSKKDRDRDRERDRDRERSSGRHRSERERDGERKDRDKDRERRDKDKDKDRDRDRDRRDRDRDGDREKERERRDKDKEREGEKEARERSTRSRSRSERDRDRERDFEMRDGRRFRVKKEASEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDATAKSADLDDDEGGLTLNAHSRALLMQRLAGADPASIGLPVVNGSVPAQQAISLPIGAPVLPTLVMPNPVVEPVGNPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASAAQHAMHLRWFARRLISAVFMQPELYEAKFKGEV*

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