SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21790 | AT | Annotation by Michelle Graham. TAIR10: ribonucleotide reductase 1 | chr2:9293529-9297580 FORWARD LENGTH=816 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009202 | GO-bp | Annotation by Michelle Graham. GO Biological Process: deoxyribonucleoside triphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005971 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribonucleoside-diphosphate reductase complex | SoyBase | N/A | ISS |
| GO:0004748 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1112 | KOG | Ribonucleotide reductase, alpha subunit | JGI | ISS | |
| PTHR11573 | Panther | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN | JGI | ISS | |
| PF00317 | PFAM | Ribonucleotide reductase, all-alpha domain | JGI | ISS | |
| PF02867 | PFAM | Ribonucleotide reductase, barrel domain | JGI | ISS | |
| PF03477 | PFAM | ATP cone domain | JGI | ISS | |
| UniRef100_Q8GZU9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=Q8GZU9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GZU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=Q8GZU9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g32070 not represented in the dataset |
Glyma05g32070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g15360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g186900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g32070.1 sequence type=CDS gene model=Glyma05g32070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATGTGGTGAAGAGAGATGGGAGGCAAGAGACGGTGCATTTTGATAAAATCACCGCGCGTCTCAAGAAACTTAGTTACGGTTTAAGCACCGAACACTGTGACCCTGTTCTGGTGTCTCAGAAAGTGTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTTTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCATTTTCTGAAACGATTAAGGTTATGTATTACCATTTTAATGAGAGATCTGCGATGAAGGCTCCTCTGATTGCTGATGACGTCTATGAAATTATCATCAAGAATGCTGCTCGATTGGACAGTGAGATAATCTATGATAGGGACTTTGACTATGATTACTTTGGTTTCAAAACTCTTGAGAGGTCATACCTCTTGAAGGTTCAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCATAAGGATGACATTGATTCTGCTGTCAGAACATACCACATGATGTCTCAGAGATGGTTCACTCATGCATCTCCAACACTTTTCAATGCAGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGAATATATGACACTTTGAAGGAGTGTGCAGTCATTAGCAAATCAGCTGGAGGAATTGGTGTTAGTGTTCACAACATTCGTGCCACAGGAAGTTACATCCGTGGCACAAATGGGACATCAAATGGTATTGTTCCAATGCTGCGTGTGTTCAACGATACTGCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGGTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGGAAGAGCATCGAGCTCGAGATTTGTTTTATGCTCTTTGGGTGTCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGGCAATGGTCTTTGTTTTGCCCCAATGAAGCGCCAGGTTTGGCTGATTGCTGGGGTGAAGAATTTGAGAAATTGTACACTCAATATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTTCAGGCACAGAATCTCTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAACTCCTTACATGCTTTTTAAGGACACTTGCAATAAAAAAAGCAACCAACAGAATTTGGGCACAATCAAGTCATCAAACTTGTGCACTGAGATAATTGAGTATACAAGTCCAACAGAAACGGCTGTGTGCAACTTGGCATCGATTGCCCTGCCGCGATATGTAAGAGAGAAGGGTGTGCCCATGGAATCTCATCCATCTAAGCTTGTTGGAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGGTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCTAGAAGATCAAACATGCGACACCGACCCATTGGTATTGGAGTTCAGGGTCTTGCCGATACCTTCATACTACTAGGTGTGGCATTTGATTCACCAGAGGCTCAGCAGTTGAACAAGGATATATTTGAGACTATATACTATCATGCACTAAAAACTTCATCTGAATTGGCTGCAAAAGAAGGTCCCTATGAAACATATAGTGGTAGTCCTATAAGCAAGGGAATTCTTCAGCCAGACATGTGGGGTGTGATGCCCTCAAGTCGTTGGGATTGGGATGCACTTCGGGAGATGATAGCAAAGACGGGTGTGAGGAACTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGTTCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAGAGGATGCTACATAGACCAGAGTCAGAGCTTGAATATTCACATGGATCAACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCTATCAAGTTTACTGTTGATACCTCTATGCTCCATGAAAAACCTATGGCAGAGGAAGAGGATGATAATACCAAGATGGCACAGATGGTGTGCTCTTTAACAAACCGAGAAGAGTGTTTGGCTTGTGGAAGTTGA
>Glyma05g32070.1 sequence type=predicted peptide gene model=Glyma05g32070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYVVKRDGRQETVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETIKVMYYHFNERSAMKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWSLFCPNEAPGLADCWGEEFEKLYTQYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIGIGVQGLADTFILLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPISKGILQPDMWGVMPSSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSMLHEKPMAEEEDDNTKMAQMVCSLTNREECLACGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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