Glyma05g31920 - SoyBase

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Report for Sequence Feature Glyma05g31920

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36953805
stop:	36959758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22510	AT	Annotation by Michelle Graham. TAIR10: alkaline/neutral invertase \| chr5:7474974-7477479 REVERSE LENGTH=617	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005987	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose catabolic process	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004564	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity	SoyBase	N/A	ISS
GO:0004575	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity	SoyBase	N/A	ISS
PF04853	PFAM	Plant neutral invertase	JGI		ISS
UniRef100_G7LBD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alkaline/neutral invertase n=1 Tax=Medicago truncatula RepID=G7LBD0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K4T0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4T0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g31920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31920

Paralog	Evidence	Comments
Glyma08g15220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g185500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g31920

Limit To All Plant Sequences

>Glyma05g31920.2   sequence type=transcript   gene model=Glyma05g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTCATCATTAAAATTGTACATAAAAGAACAGTAGTATTAAGATAAGAAAAAGAAAAGCGAAACAAAATATCAGACGCCAAGAAGAAAGAAAAAAAAAATCGACATGCGCTTCTTTATCGTGATACGTGGGTCTGTGTCCCTCTAATTTCAAGATCCACCACATTCTCAGTTCTTCCCTGGTCGAAGGAAGCAAAATTTAAGCTGGTACAGTTTCTTTCTATAAAGCAGCATGTCCCTGGGTACTTCCAAAGTAGTTTTTCAGGTTCTGTCCAGGGCTGTGCCTCAAACTGGGTATAATGATTCTCTTGTGAACTCTTCAGAATTAGCATTACATTCCCGTTTTAGAGTAAAATGTATGAAGAAAAGATCCTCAAGGCATAGGGATTTCATTGAGTGTTCTAGCATGCTTCAAAGTAGGTTAAGAACTCAACAATTTCAGTGGATGGGTGTCAGTTTCCACGACTATAAGACCTATAGTCGTCCGTGGTGGCACACATGCAAATGCCAACAGGCTGAAAGTGTGAGTGGCGTAACTACAGGAGATGGAAATGGATCAAGACTTGTGAATGATGTTGAAACAACAAATACGTTAAGCAATGGAATGAGAGCAAAGCATATCCTAGAGTTTGAAGATGTCCAAGCCCAACAGTTGAAACGGGAAAAGGAGGTTTTGGCATCTAATCTTACGAATGGATCTATTAAAGGCAGCTTTAACACAATTGACCTCAACTCCATTGAGGAAGAAGCATGGGATCTACTAAGGGAGTCTGTAGTTTATTATTGTGGCAATCCCATTGGAACTATTGCTGCAAAGGACCCAACCAGTTCCAATGTTTTGAATTATGACCAGGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGAGCTGGGAGAAAACTATGGATTGTCATAGTCCAGGACAAGGTTTGATGCCTGCTAGTTTTAAGGTTAGGACAGTTCCTTTGGATGGTGATGATTCTGCAACAGAAGAGGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGGCGTGTTGCTCCAGTTGATTCAGGATTGTGGTGGATTATTTTATTACGGGCATATGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTGCAAACAGGAATTAAGATGATATTGAGGTTGTGTCTTGCTGATGGCTTTGACATGTTCCCAACCTTATTAGTAACTGATGGTTCTTGCATGATAGATCGGAGGATGGGAATTCATGGGCATCCTTTGGAGATTCAGGCACTGTTTTATTCTGCCTTACTTTGTGCACGTGGGATGCTTACTCCAGAGGATGGATCAGCTGATCTTATACAGGCACTGAACAATCGTCTGGTAGCTCTATCATTTCATATTAGAGAATACTATTGGATTGATTTGAAAAAATTAAATGAGATTTACCGTTACAAGACAGAGGAGTACTCATATGATGCAGTTAATAAGTTCAACATATACCCAGACCAGATTTCTCCTTGGTTAGTGGAATGGATGCCAAACAAAGGAGGCTATTTAATTGGCAACCTACAACCAGCTCACATGGATTTCCGATTTTTTTCACTGGGAAACTTGTGGTCTGTCGTAAACAGCTTGGCCACAGAGGAGCAATCACATGCCATATTGGATCTTATTGAGGCCAAATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCACTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGCTCACCGCTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCAGTTGAGATTGCTGAGAGACGCATATCAAGAGACAGGTGGCCAGAATATTACGACACGAAGAGATCCCGATTCATTGGAAAACAATCTCAACTATATCAGACTTGGTCAATCGCAGGATACCTTGTTGCAAAGCTGCTGCTTGCAGACCCAAGTAAAGCAAACATACTGATCACCGAAGAGGATTCTGAGCTTGTGAATGCCTTGATTAGTGCCAACCCTAGAGGAAAGCGAGGGCGCAAAAATTTGAGGCAGACTTACATTGTATGAGTCTTTAATTGCAATTCTTGGTTCCTTTGGGTCAAATTCATTTTTCCTCTGATTATTAGCAGCATGTTATTCTTGCTAGATACGGCAGGAATATGCAAAAATATATTGTAGTTTGAGTTGGTTGTGATGAAACAAAAATACTAGTATGTATATATATGTGTATGTAATTGTGAAAGTGATGTCGATACTCCTGGTACAAGATTGTAAGTAGCATACAAAATATAACCGTTAATCATAGATGATTAGGACTTTTATACTAGTAATTTCTAGATGAATAACTAGTTTCCCCCCTGTTTGCATCATAGAATACCATTTTCCGTAAACTGCCATAGTGAATTAATTTGAAC

Coding sequences of Glyma05g31920

Limit To All Plant Sequences

>Glyma05g31920.1   sequence type=CDS   gene model=Glyma05g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTGGGTACTTCCAAAGTAGTTTTTCAGGTTCTGTCCAGGGCTGTGCCTCAAACTGGGTATAATGATTCTCTTGTGAACTCTTCAGAATTAGCATTACATTCCCGTTTTAGAGTAAAATGTATGAAGAAAAGATCCTCAAGGCATAGGGATTTCATTGAGTGTTCTAGCATGCTTCAAAGTAGGTTAAGAACTCAACAATTTCAGTGGATGGGTGTCAGTTTCCACGACTATAAGACCTATAGTCGTCCGTGGTGGCACACATGCAAATGCCAACAGGCTGAAAGTGTGAGTGGCGTAACTACAGGAGATGGAAATGGATCAAGACTTGTGAATGATGTTGAAACAACAAATACGTTAAGCAATGGAATGAGAGCAAAGCATATCCTAGAGTTTGAAGATGTCCAAGCCCAACAGTTGAAACGGGAAAAGGAGGTTTTGGCATCTAATCTTACGAATGGATCTATTAAAGGCAGCTTTAACACAATTGACCTCAACTCCATTGAGGAAGAAGCATGGGATCTACTAAGGGAGTCTGTAGTTTATTATTGTGGCAATCCCATTGGAACTATTGCTGCAAAGGACCCAACCAGTTCCAATGTTTTGAATTATGACCAGGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGAGCTGGGAGAAAACTATGGATTGTCATAGTCCAGGACAAGGTTTGATGCCTGCTAGTTTTAAGGTTAGGACAGTTCCTTTGGATGGTGATGATTCTGCAACAGAAGAGGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGGCGTGTTGCTCCAGTTGATTCAGGATTGTGGTGGATTATTTTATTACGGGCATATGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTGCAAACAGGAATTAAGATGATATTGAGGTTGTGTCTTGCTGATGGCTTTGACATGTTCCCAACCTTATTAGTAACTGATGGTTCTTGCATGATAGATCGGAGGATGGGAATTCATGGGCATCCTTTGGAGATTCAGGCACTGTTTTATTCTGCCTTACTTTGTGCACGTGGGATGCTTACTCCAGAGGATGGATCAGCTGATCTTATACAGGCACTGAACAATCGTCTGGTAGCTCTATCATTTCATATTAGAGAATACTATTGGATTGATTTGAAAAAATTAAATGAGATTTACCGTTACAAGACAGAGGAGTACTCATATGATGCAGTTAATAAGTTCAACATATACCCAGACCAGATTTCTCCTTGGTTAGTGGAATGGATGCCAAACAAAGGAGGCTATTTAATTGGCAACCTACAACCAGCTCACATGGATTTCCGATTTTTTTCACTGGGAAACTTGTGGTCTGTCGTAAACAGCTTGGCCACAGAGGAGCAATCACATGCCATATTGGATCTTATTGAGGCCAAATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCACTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGCTCACCGCTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCAGTTGAGATTGCTGAGAGACGCATATCAAGAGACAGGTGGCCAGAATATTACGACACGAAGAGATCCCGATTCATTGGAAAACAATCTCAACTATATCAGACTTGGTCAATCGCAGGATACCTTGTTGCAAAGCTGCTGCTTGCAGACCCAAGTAAAGCAAACATACTGATCACCGAAGAGGATTCTGAGCTTGTGAATGCCTTGATTAGTGCCAACCCTAGAGGAAAGCGAGGGCGCAAAAATTTGAGGCAGACTTACATTGTATGA

>Glyma05g31920.2   sequence type=CDS   gene model=Glyma05g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTGGGTACTTCCAAAGTAGTTTTTCAGGTTCTGTCCAGGGCTGTGCCTCAAACTGGGTATAATGATTCTCTTGTGAACTCTTCAGAATTAGCATTACATTCCCGTTTTAGAGTAAAATGTATGAAGAAAAGATCCTCAAGGCATAGGGATTTCATTGAGTGTTCTAGCATGCTTCAAAGTAGGTTAAGAACTCAACAATTTCAGTGGATGGGTGTCAGTTTCCACGACTATAAGACCTATAGTCGTCCGTGGTGGCACACATGCAAATGCCAACAGGCTGAAAGTGTGAGTGGCGTAACTACAGGAGATGGAAATGGATCAAGACTTGTGAATGATGTTGAAACAACAAATACGTTAAGCAATGGAATGAGAGCAAAGCATATCCTAGAGTTTGAAGATGTCCAAGCCCAACAGTTGAAACGGGAAAAGGAGGTTTTGGCATCTAATCTTACGAATGGATCTATTAAAGGCAGCTTTAACACAATTGACCTCAACTCCATTGAGGAAGAAGCATGGGATCTACTAAGGGAGTCTGTAGTTTATTATTGTGGCAATCCCATTGGAACTATTGCTGCAAAGGACCCAACCAGTTCCAATGTTTTGAATTATGACCAGGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGAGCTGGGAGAAAACTATGGATTGTCATAGTCCAGGACAAGGTTTGATGCCTGCTAGTTTTAAGGTTAGGACAGTTCCTTTGGATGGTGATGATTCTGCAACAGAAGAGGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGGCGTGTTGCTCCAGTTGATTCAGGATTGTGGTGGATTATTTTATTACGGGCATATGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTGCAAACAGGAATTAAGATGATATTGAGGTTGTGTCTTGCTGATGGCTTTGACATGTTCCCAACCTTATTAGTAACTGATGGTTCTTGCATGATAGATCGGAGGATGGGAATTCATGGGCATCCTTTGGAGATTCAGGCACTGTTTTATTCTGCCTTACTTTGTGCACGTGGGATGCTTACTCCAGAGGATGGATCAGCTGATCTTATACAGGCACTGAACAATCGTCTGGTAGCTCTATCATTTCATATTAGAGAATACTATTGGATTGATTTGAAAAAATTAAATGAGATTTACCGTTACAAGACAGAGGAGTACTCATATGATGCAGTTAATAAGTTCAACATATACCCAGACCAGATTTCTCCTTGGTTAGTGGAATGGATGCCAAACAAAGGAGGCTATTTAATTGGCAACCTACAACCAGCTCACATGGATTTCCGATTTTTTTCACTGGGAAACTTGTGGTCTGTCGTAAACAGCTTGGCCACAGAGGAGCAATCACATGCCATATTGGATCTTATTGAGGCCAAATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCACTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGCTCACCGCTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCAGTTGAGATTGCTGAGAGACGCATATCAAGAGACAGGTGGCCAGAATATTACGACACGAAGAGATCCCGATTCATTGGAAAACAATCTCAACTATATCAGACTTGGTCAATCGCAGGATACCTTGTTGCAAAGCTGCTGCTTGCAGACCCAAGTAAAGCAAACATACTGATCACCGAAGAGGATTCTGAGCTTGTGAATGCCTTGATTAGTGCCAACCCTAGAGGAAAGCGAGGGCGCAAAAATTTGAGGCAGACTTACATTGTATGA

Predicted protein sequences of Glyma05g31920

Limit To All Plant Sequences

>Glyma05g31920.1   sequence type=predicted peptide   gene model=Glyma05g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGTSKVVFQVLSRAVPQTGYNDSLVNSSELALHSRFRVKCMKKRSSRHRDFIECSSMLQSRLRTQQFQWMGVSFHDYKTYSRPWWHTCKCQQAESVSGVTTGDGNGSRLVNDVETTNTLSNGMRAKHILEFEDVQAQQLKREKEVLASNLTNGSIKGSFNTIDLNSIEEEAWDLLRESVVYYCGNPIGTIAAKDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCARGMLTPEDGSADLIQALNNRLVALSFHIREYYWIDLKKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSVVNSLATEEQSHAILDLIEAKWSDLVAEMPFKICYPALDGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTAACIKMKRTHIAAKAVEIAERRISRDRWPEYYDTKRSRFIGKQSQLYQTWSIAGYLVAKLLLADPSKANILITEEDSELVNALISANPRGKRGRKNLRQTYIV*

>Glyma05g31920.2   sequence type=predicted peptide   gene model=Glyma05g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGTSKVVFQVLSRAVPQTGYNDSLVNSSELALHSRFRVKCMKKRSSRHRDFIECSSMLQSRLRTQQFQWMGVSFHDYKTYSRPWWHTCKCQQAESVSGVTTGDGNGSRLVNDVETTNTLSNGMRAKHILEFEDVQAQQLKREKEVLASNLTNGSIKGSFNTIDLNSIEEEAWDLLRESVVYYCGNPIGTIAAKDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCARGMLTPEDGSADLIQALNNRLVALSFHIREYYWIDLKKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSVVNSLATEEQSHAILDLIEAKWSDLVAEMPFKICYPALDGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTAACIKMKRTHIAAKAVEIAERRISRDRWPEYYDTKRSRFIGKQSQLYQTWSIAGYLVAKLLLADPSKANILITEEDSELVNALISANPRGKRGRKNLRQTYIV*

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