Glyma05g31910 - SoyBase

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Report for Sequence Feature Glyma05g31910

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36943087
stop:	36944876
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39410	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 13 \| chr4:18332937-18334789 REVERSE LENGTH=304	SoyBase	E_val: 1.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_Q2PJS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY40 n=1 Tax=Glycine max RepID=Q2PJS2_SOYBN	SoyBase	E_val: 4.00E-135	ISS
UniRef100_UPI000233A559	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A559 related cluster n=1 Tax=unknown RepID=UPI000233A559	SoyBase	E_val: 8.00E-153	ISS

Proteins Associated with Glyma05g31910

Locus	Gene Symbol	Protein Name
	WRKY93	WRKY Transcription Factor

Expression Patterns of Glyma05g31910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31910

Paralog	Evidence	Comments
Glyma08g15210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g185400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g31910

Limit To All Plant Sequences

>Glyma05g31910.1   sequence type=CDS   gene model=Glyma05g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACAACTTCCCATTCCATTGTTCACCACAGCTTATTCGAGGAGCAGGATCAGATGCCTACACAGATAGGTTTCTTTCCCTTTCCAACAAACCTTACTTTCCCTCCTTTGGGTTGCCATCAATCCTCTCTGAAAGCCTTCAGCTCCATAGCACCTTCTTCATCACTTGTTATATCTCAACAAGATTCTGTATCAAATCTAACAGCAGAAACCCTATTCTCAACCACTGCTCAAAAGTCAAGGGAAGACCTCACTTCTAGCTTTCGAGGAGCTCAATTCCTATCCTTGCATAGATTAAGTGTAAATCCATGGGCACTTGGAGAAGTGGCTGATTGCTTCAGCAGTAAAAGAACCACGAAGATGAAGAAAATCAAGGCAAGAAGGAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGCGATATGGATGAATTGGACGATGGCTACAAGTGGAGGAAGTATGGACAGAAAGTTGTGAAGGGCACGCATCACCCTAGAAGCTATTACCGTTGCATACAAGATAATTGTCGTGTAAAGAAACGAGTGGAACGCTTCGCCGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTCGAAGACTCCATCTCAACTTGA

Predicted protein sequences of Glyma05g31910

Limit To All Plant Sequences

>Glyma05g31910.1   sequence type=predicted peptide   gene model=Glyma05g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTSHSIVHHSLFEEQDQMPTQIGFFPFPTNLTFPPLGCHQSSLKAFSSIAPSSSLVISQQDSVSNLTAETLFSTTAQKSREDLTSSFRGAQFLSLHRLSVNPWALGEVADCFSSKRTTKMKKIKARRKVREPRFCFKTMSDMDELDDGYKWRKYGQKVVKGTHHPRSYYRCIQDNCRVKKRVERFAEDPRMVITTYEGRHVHSPSNDLEDSIST*

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