SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03800 | AT | Annotation by Michelle Graham. TAIR10: D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317 | SoyBase | E_val: 4.00E-174 | ISS |
| GO:0009636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to toxin | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| GO:0051499 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: D-aminoacyl-tRNA deacylase activity | SoyBase | N/A | ISS |
| PF04414 | PFAM | D-aminoacyl-tRNA deacylase | JGI | ISS | |
| UniRef100_C6TL92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TL92_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7LG90 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-aminoacyl-tRNA deacylase n=1 Tax=Medicago truncatula RepID=G7LG90_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma05g31740 not represented in the dataset |
Glyma05g31740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g183800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31740.4 sequence type=transcript gene model=Glyma05g31740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAATAAACTCAACGAATTAATTTACCCTCGTTGGATAATAAATCTCAATTTTTTTTTTTAAAAAAAAAAGAGAAAAAAAACCTTGTGGATCTCCCCAAGCATAGAGCATGTTAGTCACGTTAGCAGCGGGCAAGTTGGTCCGGCGGCACCTTCCCCTTTTCTTTCGGCTGTTCCATCTTCAAAACCGTGGGCTCGGATCTTCAAAATCAAAACGAATTTCCATTCGTTATCATATAAATACCTCATCTTCATCCCCAAAACCACTTTCAGTTTCAGAACACAAAGCAATGGTGGCGCTCCTAGTGGCAACTACATCCGACCCTGCTTCCATCAACCCGGCCAACGCGCTTTTGGGCATGCCCGGGTGGAAACCCGGTCCCCATTTCCAGGATGATATGAAGAGCTATGTGAATGAAGGGGTGAGGGTGTTGGTACATGGGAAGAGCATAGTTGCGGAAGATGAGTTGGACAAGAGGTGGGAAGAAGTTACTGGGGAGGTTATTGATGAAGTGATCTTCTTCAGCAAGCACACTGCTGCCTCCAACAAGCCTGCCCTGACTGTTCACCCTATTGGAGTTCCTCATTTGCGCCAAGGCGATGTTCCCCCCCAAGGCGGCAGACCTGGATGGGCAGCTCTTCCAAATCCTAGGATGGGGCCTTGGCTTCGCCTTTTGAAAAACCTTGCCCAAGCTCATAATCTTGTCCCTGAATTTGAGATTACTTTAGAGGCCACTCACCATGGACCGTTGACCAATAAGCCAACCATGTTTTTGGAGATTGGTAGTACTGAAGACTATTGGAAGAGACAGGATGCTGCTCAAGTTATGGCACAGTTAGTATGGGAAGGACTTGGACTTGGAGGTGTGTCAGATGTAGGAAACTGGAGCAGGGAGAATGATAACAAGAAAATCCTTCTTGGGATAGGTGGTGGACATTATGCACCTCGGCATGTGGATGTAGTATTGAAAGATAATGTATGGGTGGGTCACCTACTTTCTGGATATTCGCTGCCAATGGAAGATCCAAACCAGTCAAAAGGAGAAAAAAATGTGGAGATTGGTGGAACATGGAGACAGTCTATAAAAGCTGCATATGAAGCCACTTATTCTGCATTTCCTGGTGGTGAAATTCTTGCACATCTAGACCACAAGTGAGCTTAATGAGCATTGTCCTTATGCAATCAGCAATCTGTTTGTATTGCTAATGCCAAAGCAAGAAGTGAATGCTATTTCATGGTTGAGAGCTGAACAGTTTATAAAAAAAAAATCATCCACAACCACAAGGCACCTTGGTTTGAAAAACTTAATCAATGTTGTTATTTAGACCACAATCTGTTTAAGGCTTTCCACCTACCATTATTCTCTTGCAGTAATAGATTGT
>Glyma05g31740.3 sequence type=CDS gene model=Glyma05g31740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGTCACGTTAGCAGCGGGCAAGTTGGTCCGGCGGCACCTTCCCCTTTTCTTTCGGCTGTTCCATCTTCAAAACCGTGGGCTCGGATCTTCAAAATCAAAACGAATTTCCATTCGTTATCATATAAATACCTCATCTTCATCCCCAAAACCACTTTCAGTTTCAGAACACAAAGCAATGGTGGCGCTCCTAGTGGCAACTACATCCGACCCTGCTTCCATCAACCCGGCCAACGCGCTTTTGGGCATGCCCGGGTGGAAACCCGGTCCCCATTTCCAGGATGATATGAAGAGCTATGTGAATGAAGGGGTGAGGGTGTTGGTACATGGGAAGAGCATAGTTGCGGAAGATGAGTTGGACAAGAGGTGGGAAGAAGTTACTGGGGAGGTTATTGATGAAGTGATCTTCTTCAGCAAGCACACTGCTGCCTCCAACAAGCCTGCCCTGACTGTTCACCCTATTGGAGTTCCTCATTTGCGCCAAGGCGATGTTCCCCCCCAAGGCGGCAGACCTGGATGGGCAGCTCTTCCAAATCCTAGGATGGGGCCTTGGCTTCGCCTTTTGAAAAACCTTGCCCAAGCTCATAATCTTGTCCCTGAATTTGAGATTACTTTAGAGGCCACTCACCATGGACCGTTGACCAATAAGCCAACCATGTTTTTGGAGATTGGTAGTACTGAAGACTATTGGAAGAGACAGGATGCTGCTCAAGTTATGGCACAGTTAGTATGGGAAGGACTTGGACTTGGAGGTGTGTCAGATGTAGGAAACTGGAGCAGGGAGAATGATAACAAGAAAATCCTTCTTGGGATAGGTGGTGGACATTATGCACCTCGGCATGTGGATGTAGTATTGAAAGATAATGTATGGGTGGGTCACCTACTTTCTGGATATTCGCTGCCAATGGAAGATCCAAACCAGTCAAAAGGAGAAAAAAATGTGGAGATTGGTGGAACATGGAGACAGTCTATAAAAGCTGCATATGAAGCCACTTATTCTGCATTTCCTGGTGGTGAAATTCTTGCACATCTAGACCACAAGAGTTTCAAGGGCTGGCAGAAGAATGCCATAACAGGATTCCTTGCGGAGCAAAACATTAAAATTGGAAAACCCAATAACTTCTATTGA >Glyma05g31740.4 sequence type=CDS gene model=Glyma05g31740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGTCACGTTAGCAGCGGGCAAGTTGGTCCGGCGGCACCTTCCCCTTTTCTTTCGGCTGTTCCATCTTCAAAACCGTGGGCTCGGATCTTCAAAATCAAAACGAATTTCCATTCGTTATCATATAAATACCTCATCTTCATCCCCAAAACCACTTTCAGTTTCAGAACACAAAGCAATGGTGGCGCTCCTAGTGGCAACTACATCCGACCCTGCTTCCATCAACCCGGCCAACGCGCTTTTGGGCATGCCCGGGTGGAAACCCGGTCCCCATTTCCAGGATGATATGAAGAGCTATGTGAATGAAGGGGTGAGGGTGTTGGTACATGGGAAGAGCATAGTTGCGGAAGATGAGTTGGACAAGAGGTGGGAAGAAGTTACTGGGGAGGTTATTGATGAAGTGATCTTCTTCAGCAAGCACACTGCTGCCTCCAACAAGCCTGCCCTGACTGTTCACCCTATTGGAGTTCCTCATTTGCGCCAAGGCGATGTTCCCCCCCAAGGCGGCAGACCTGGATGGGCAGCTCTTCCAAATCCTAGGATGGGGCCTTGGCTTCGCCTTTTGAAAAACCTTGCCCAAGCTCATAATCTTGTCCCTGAATTTGAGATTACTTTAGAGGCCACTCACCATGGACCGTTGACCAATAAGCCAACCATGTTTTTGGAGATTGGTAGTACTGAAGACTATTGGAAGAGACAGGATGCTGCTCAAGTTATGGCACAGTTAGTATGGGAAGGACTTGGACTTGGAGGTGTGTCAGATGTAGGAAACTGGAGCAGGGAGAATGATAACAAGAAAATCCTTCTTGGGATAGGTGGTGGACATTATGCACCTCGGCATGTGGATGTAGTATTGAAAGATAATGTATGGGTGGGTCACCTACTTTCTGGATATTCGCTGCCAATGGAAGATCCAAACCAGTCAAAAGGAGAAAAAAATGTGGAGATTGGTGGAACATGGAGACAGTCTATAAAAGCTGCATATGAAGCCACTTATTCTGCATTTCCTGGTGGTGAAATTCTTGCACATCTAGACCACAAGTGA
>Glyma05g31740.3 sequence type=predicted peptide gene model=Glyma05g31740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVTLAAGKLVRRHLPLFFRLFHLQNRGLGSSKSKRISIRYHINTSSSSPKPLSVSEHKAMVALLVATTSDPASINPANALLGMPGWKPGPHFQDDMKSYVNEGVRVLVHGKSIVAEDELDKRWEEVTGEVIDEVIFFSKHTAASNKPALTVHPIGVPHLRQGDVPPQGGRPGWAALPNPRMGPWLRLLKNLAQAHNLVPEFEITLEATHHGPLTNKPTMFLEIGSTEDYWKRQDAAQVMAQLVWEGLGLGGVSDVGNWSRENDNKKILLGIGGGHYAPRHVDVVLKDNVWVGHLLSGYSLPMEDPNQSKGEKNVEIGGTWRQSIKAAYEATYSAFPGGEILAHLDHKSFKGWQKNAITGFLAEQNIKIGKPNNFY* >Glyma05g31740.4 sequence type=predicted peptide gene model=Glyma05g31740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVTLAAGKLVRRHLPLFFRLFHLQNRGLGSSKSKRISIRYHINTSSSSPKPLSVSEHKAMVALLVATTSDPASINPANALLGMPGWKPGPHFQDDMKSYVNEGVRVLVHGKSIVAEDELDKRWEEVTGEVIDEVIFFSKHTAASNKPALTVHPIGVPHLRQGDVPPQGGRPGWAALPNPRMGPWLRLLKNLAQAHNLVPEFEITLEATHHGPLTNKPTMFLEIGSTEDYWKRQDAAQVMAQLVWEGLGLGGVSDVGNWSRENDNKKILLGIGGGHYAPRHVDVVLKDNVWVGHLLSGYSLPMEDPNQSKGEKNVEIGGTWRQSIKAAYEATYSAFPGGEILAHLDHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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