Glyma05g31720 - SoyBase

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Report for Sequence Feature Glyma05g31720

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36806814
stop:	36810190
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21960	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). \| chr2:9354990-9356958 FORWARD LENGTH=332	SoyBase	E_val: 5.00E-166	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
UniRef100_I1KT93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KT93_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01HX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0138H21-OSIGBa0138E01.2 protein n=4 Tax=Oryza sativa RepID=Q01HX3_ORYSA	SoyBase	E_val: 9.00E-179	ISS

Expression Patterns of Glyma05g31720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31720

Paralog	Evidence	Comments
Glyma08g14970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g183600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g31720

Limit To All Plant Sequences

>Glyma05g31720.1   sequence type=CDS   gene model=Glyma05g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGATGACAACCATGGCTAACTCATCTCTGCTTCCCAAACCCTATTATTACCATAATTTCCATTATCAACACCTAAGATGCTTCAAGATCAACCTCCCAAAATGGACTACTAGTACTAGAGCTTCCTCTGCTGCCCCTGGGGTCGACCTCAACACTCTCGAATTTGCCATTTCCAAGAAAGACAGTGATGCTGTTAAAGAGGCACTTAATCAGCTTAGTGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCATGTCGTACGACATCACTCCGGGAGCTGACAAGTCTAGGCATAAAAAACTCAGAGAACCTTGCAATTCCTAGTGTCAGAAACGATGCAGCTTTTCTTTTTACCGTGGTTGGAACAACAGGATTTTTGGCTGTTCTTGCTGGGCAACTTCCCGGGGATTGGGGCTTCTTTGTACCGTACTTGATTGGGAGTATCTCATTAGTGGTTTTGGCTGTGGGTAGCATATCCCCAGGGCTTCTCCAAGCTGCTATTGGCAGCTTTTCAACACTTTTTCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCAGCTCACTTTTTGATTGCTTATCTGCTGGGCCTACCCATTTTTGATTATTCCCTGGATATTGGGAAAGAACATGTCAATCTCATTGATGAGAGGCTTGAAAAACTTATCTATAGTGGACAGCTTGATGCCAAAGAGCTAGATAGATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGAGATTTATTAACAGAACCAAGCCACCACTCAGCAAAGATCAGCAACAAAATCTCACAAGATGGGCCGTTCTGTTTGCTGCTTCTCTCTTGAAAAATAACAAGGTGACTCATGAAGCCTTAATGGCAGCGATGACAAAGAAGGCAAGCGTACTGGAATGCATTCGGGCAATCGAAAATGCAGCATAG

Predicted protein sequences of Glyma05g31720

Limit To All Plant Sequences

>Glyma05g31720.1   sequence type=predicted peptide   gene model=Glyma05g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWMTTMANSSLLPKPYYYHNFHYQHLRCFKINLPKWTTSTRASSAAPGVDLNTLEFAISKKDSDAVKEALNQLSEVGWAKKWSSQPYVSCRTTSLRELTSLGIKNSENLAIPSVRNDAAFLFTVVGTTGFLAVLAGQLPGDWGFFVPYLIGSISLVVLAVGSISPGLLQAAIGSFSTLFPDYQERIARHEAAHFLIAYLLGLPIFDYSLDIGKEHVNLIDERLEKLIYSGQLDAKELDRLAVVSMAGLAAEGLTYDKVVGQSADLFSLQRFINRTKPPLSKDQQQNLTRWAVLFAASLLKNNKVTHEALMAAMTKKASVLECIRAIENAA*

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