SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39660 | AT | Annotation by Michelle Graham. TAIR10: alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476 | SoyBase | E_val: 0 | ISS |
| GO:0019544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine catabolic process to glutamate | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0008453 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alanine-glyoxylate transaminase activity | SoyBase | N/A | ISS |
| GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1404 | KOG | Alanine-glyoxylate aminotransferase AGT2 | JGI | ISS | |
| PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | ISS | |
| PTHR11986:SF23 | Panther | AMINOTRANSFERASE | JGI | ISS | |
| PF00202 | PFAM | Aminotransferase class-III | JGI | ISS | |
| UniRef100_B7FLF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alanine-glyoxylate aminotransferase-like protein n=1 Tax=Medicago truncatula RepID=B7FLF5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00018C6B7A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6B7A related cluster n=1 Tax=unknown RepID=UPI00018C6B7A | SoyBase | E_val: 0 | ISS |
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Glyma05g31630 not represented in the dataset |
Glyma05g31630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g14850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g182600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31630.2 sequence type=transcript gene model=Glyma05g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAAATATTTGATTCATGGTACGTGGGGGACTCGTCTAGATTCCTCTCCACATCAGCATATGCATTCCCTCCCTCCCTCCCTCAACGGACGCCAAATATTTCAGTTTCACATATGCACATGCATTCTCTCTCTCTCTCTCCACAATCTCACCTCGCGTGTCAGAATAACTCGTGACTCACTCAGTCGCCACAACACAAACATGGTAATAAAATAATAAAATACTATACATATATATATATACCCACCATCGAAAAATCAGAACAGAACCCAACCAAAGCAGCTATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACCCTCCGCCGCTGCCGCCGCCGCCGCCGATACCGTCGCGCCTCCGCAGCTCCCCCCGTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGGTTACACAAGAACCATTTTATTCTATGCATGTGAAGCCTTATTTTCCAAAATAACTTCCAAACAGTCTTAACAATTTATTTGTATATGCATTGAAGAACTCGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATTGTGCATCTTGCTAGCATGAAATGAAATCTTCGACAATGGAGTCAAATTACTACAAGCCAACAACAAAAAGCTCATTTAGTTCATAGAAATCACCATGAATAATGTAATGTTCTCCCCGTTGAGAAGAGAGGGGGTTTCCCTCCCTTTTTGCTGAACATTATAAGTTGAATGCTGACTATTATTGTATATAAATTTGGGTTTCATGACATCAAAAAGTTGCATTCAATCTGCAGAGTAATGTTTAAATCCATATAGAAAGAGACTACATTTGCATATTGGCTTATATATCAAATAACGAAATCAATTACCTGCACGAGTTGCCTTATTCAAAA
>Glyma05g31630.1 sequence type=CDS gene model=Glyma05g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACCCTCCGCCGCTGCCGCCGCCGCCGCCGATACCGTCGCGCCTCCGCAGCTCCCCCCGTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGAACTCGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGA >Glyma05g31630.2 sequence type=CDS gene model=Glyma05g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACCCTCCGCCGCTGCCGCCGCCGCCGCCGATACCGTCGCGCCTCCGCAGCTCCCCCCGTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGGTTACACAAGAACCATTTTATTCTATGCATGTGAAGCCTTATTTTCCAAAATAACTTCCAAACAGTCTTAA
>Glyma05g31630.1 sequence type=predicted peptide gene model=Glyma05g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAMQRPLKRTIAIAKQRACFSSLLPSAAAAAAADTVAPPQLPPFDHQPHPYNGPSADEVFAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILNAITEQSKLLQHATTIYLHHTIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGNLGMISLRNAYHGGSSSTLGLTALNSWKYPIPEGHVHHVMNPDPYHGAFGTDAASYANDVQDHIDYGTSGKVAGFIAESIQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSAGGLAVLRVLDKEKRQAHCADVGSYLLERLRFLMERHDIIGNVRGRGLMVGLELVTDRTNKTPAKAETAVVFEKLRELGVLVGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSLSKL* >Glyma05g31630.2 sequence type=predicted peptide gene model=Glyma05g31630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAMQRPLKRTIAIAKQRACFSSLLPSAAAAAAADTVAPPQLPPFDHQPHPYNGPSADEVFAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILNAITEQSKLLQHATTIYLHHTIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGNLGMISLRNAYHGGSSSTLGLTALNSWKYPIPEGHVHHVMNPDPYHGAFGTDAASYANDVQDHIDYGTSGKVAGFIAESIQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSAGGLAVLRVLDKEKRQAHCADVGSYLLERLRFLMERHDIIGNVRGRGLMVGLELVTDRTNKTPAKAETAVVFEKLRGYTRTILFYACEALFSKITSKQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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