SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22120 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363 | SoyBase | E_val: 1.00E-159 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23012 | Panther | MEMBRANE ASSOCIATED RING FINGER | JGI | ISS | |
| PTHR23012:SF27 | Panther | OS08G0384900 PROTEIN | JGI | ISS | |
| UniRef100_B9T6Q8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T6Q8_RICCO | SoyBase | E_val: 9.00E-166 | ISS |
| UniRef100_I1K4N4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4N4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g31600 not represented in the dataset |
Glyma05g31600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g182200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31600.1 sequence type=CDS gene model=Glyma05g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGATTCTTCTCCTCTTATCCCTCCCTCACCGGTCACAGTCACCGAGATCGACCTCGAAGAGGGACCCTCCGAACAAATTCAATGCCGGATTTGTCTTGAAACTGATGGTAGAAATTTCATAGTTCCTTGTAAGTGCAAAGGTACGTCAAAGTACGTACATAGAGAGTGTTTAGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCATTTGCCCATTGCACTACTTGCAAGGCTCCATACCATTTGCGTGTTCATGGTGCTTATAGACAATGGCGTACTTTCAAATTTCGGTTTTTTGTAACCCGAGACATTTTGCTTATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTTGCTTATTTGGTTTACCAAATAGATGGTTACGAGAAGTATTGGCTTCGTCTTGTTTGGGGTTTTGGTAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGGTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTCTGATCCAAGAATTCGCAGTGATTTGGGTCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGATCGTCATTTGCATGGTACTCCTTATATGTACGGTACTCCTTATATGTCGACTGATTGCAATGCATGCTGTGAGAATTGTGGAACTGAATGCTGTGGTTGCACTTGCATGAGAGGTTCTGAGGACGAAGCAGGGCTACCATTATTATTCATAATGGTTTTGTTTTTTCTGGTACTCTTTGCTGTACTTGGGATATTTTACAGTGTATTAGTGGCTACAATGATAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGAACATTGATGGAGAGATAGCAGGGCCTAATTGGACTCCTCCACCCCTCCCCCAGGAGCATGTACGGCAGCTGAAAACATTGGGCCTCCTATGA
>Glyma05g31600.1 sequence type=predicted peptide gene model=Glyma05g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTDSSPLIPPSPVTVTEIDLEEGPSEQIQCRICLETDGRNFIVPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAYRQWRTFKFRFFVTRDILLIFLAVQLVIASLAYLVYQIDGYEKYWLRLVWGFGSELSFYYICGALVFFVLLGLSGCFITCSDPRIRSDLGQPCREICLCCCQPGVCADRHLHGTPYMYGTPYMSTDCNACCENCGTECCGCTCMRGSEDEAGLPLLFIMVLFFLVLFAVLGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVENIDGEIAGPNWTPPPLPQEHVRQLKTLGLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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