Report for Sequence Feature Glyma05g31560
Feature Type: gene_model
Chromosome: Gm05
Start: 36696406
stop: 36699663
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g31560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10060 AT
Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein | chr5:3145994-3148049 REVERSE LENGTH=469
SoyBase E_val: 5.00E-132 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2669
KOG
Regulator of nuclear mRNA
JGI ISS
PTHR12460 Panther
UNCHARACTERIZED
JGI ISS
PF04818 PFAM
Protein of unknown function, DUF618
JGI ISS
UniRef100_G7J4E0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Medicago truncatula RepID=G7J4E0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K4N0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4N0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g31560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g31560
Paralog Evidence Comments
Glyma08g14790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g31560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g181900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g31560
Coding sequences of Glyma05g31560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31560.1 sequence type=CDS gene model=Glyma05g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATCCATTGCCTTCCTGTATGTATTTTTTTTACGTATTTTACTTTTGCTTCTCTCTCTCTCTCTCTTTTTCTATGATTTGGGACCTGCAGTGACACCCACTATTGATCAGAACAATTGCCATCTTGAAAAGGCTTTATCACATTGGTGTATATTTCACCGAAGCAAAGCAGAGCTGGTAGTGGGAACATGGAATAAACAATTTCACAATTCAGAGAAGGTTCAGCGAGTCCCCCTTCTGTATCTTGCAAATGATATCCTGCAAAACAGCAAACGTAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCCACAGCACTTAAGGATGTTCTTGAGAAAGGTGATGATCAAGAAAAACGTGCAGTATTTAGACTGGTTGATATATGGGAGGAAAGGAGAGTGTTTGGATCTCAGGCTAAGAGCCTTAAAAATGTAATACTTGGAGAAGAAGCACCTCCGCAGTTGGAATTCAACAAAAAGCGGTCCCGTTCAGTTAGAATTGTGAAAAAGGATTCTCGTTCCATTAAAACGAAATTGTCCATTGGAGGTACAGCAGAAAAAATAGTCTCAGCCTTTCATACGGTGCTTAATGAACATTCCAATGAAGATGCAGAGATGAGTAAATGCAAGGCAGCTGTTCATCGTGTGAGGAAGATGGAAAAAAATGTTGATATTGCATGCACTGTTGTAAAGGACCCTAAGCGAAAAACTTTGTCCAAGGAACTAGTGGAGGAAGAAAATATTTTGAAAGAATGCATTGAAAATCTCAAATTAGTTGAAGCAAGTAGAACATCACTTGTTACTCGCTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAGCTGGAGAATGTTCGCACTCAGATTCAGGTAGCACAAGCACAAGTAGAAGAGGCTAGCTACATGCGGAAGCGACTTGATGATGAAGATTCTTCATATAAAGCCTCAACTTCAACGACTTCAGTTACTGATGTGAATACAAAATCAGAAGCAGCAACTAAGAAGTCAGCTGCAGCAATTGCAGCTGAGGTTGCAGATAAGCTAACAGCTTCTACGTCATCGCAGTTAATCATGACTTCTGTTCTCTCAACATTTGCAGCGGAAGAGGCAAAAAGTGCTTGTCTAACTTCTGAGACCATGTCAAAACCTGAGAAGTCAATACCTATATCAGATCCAAATGTTTTTATGACTTCACAACAGTTAATTGCCACACCAAATCATTCATATCCTTCGGTTTTGGTACCTCAACCCACCTTGCAGAATCCAGCTGCTGCATCACAGGGTCAATATCAAATGCTTTGTAATTCATCCTCCCAGCATTATTTGCAATCAACAGGAGGGGTCATTTCTTCTTATGGTTATGGTAGCATCGCACCATTACCATTGGGGCCACCCCCACCCCATATGGTGGGTCCAATGGTTCCTTTGACACATCAGACAATGCAAATAACTCAGCAGCTGCCTACACCTATAGGTCAGCATCAACCAATAAAAATGACACAACAAGCCCCAGCACCTCCTAATTTCCGACCACTTCAACTGCCAGGAATGGTGTACTATGGTAATCATCAGCATTCTATATGA
Predicted protein sequences of Glyma05g31560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g31560.1 sequence type=predicted peptide gene model=Glyma05g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASIAFLYVFFLRILLLLLSLSLFFYDLGPAVTPTIDQNNCHLEKALSHWCIFHRSKAELVVGTWNKQFHNSEKVQRVPLLYLANDILQNSKRKGNEFVTEFWKVLPTALKDVLEKGDDQEKRAVFRLVDIWEERRVFGSQAKSLKNVILGEEAPPQLEFNKKRSRSVRIVKKDSRSIKTKLSIGGTAEKIVSAFHTVLNEHSNEDAEMSKCKAAVHRVRKMEKNVDIACTVVKDPKRKTLSKELVEEENILKECIENLKLVEASRTSLVTRLKEALHEQESELENVRTQIQVAQAQVEEASYMRKRLDDEDSSYKASTSTTSVTDVNTKSEAATKKSAAAIAAEVADKLTASTSSQLIMTSVLSTFAAEEAKSACLTSETMSKPEKSIPISDPNVFMTSQQLIATPNHSYPSVLVPQPTLQNPAAASQGQYQMLCNSSSQHYLQSTGGVISSYGYGSIAPLPLGPPPPHMVGPMVPLTHQTMQITQQLPTPIGQHQPIKMTQQAPAPPNFRPLQLPGMVYYGNHQHSI*