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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22250 | AT | Annotation by Michelle Graham. TAIR10: aspartate aminotransferase | chr2:9458011-9460028 REVERSE LENGTH=428 | SoyBase | E_val: 0 | ISS |
| GO:0009095 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process, prephenate pathway | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004069 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0033853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartate-prephenate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0033854 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate-prephenate aminotransferase activity | SoyBase | N/A | ISS |
| KOG0257 | KOG | Kynurenine aminotransferase, glutamine transaminase K | JGI | ISS | |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF35 | Panther | AMINOTRANSFERASE | JGI | ISS | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | ISS | |
| UniRef100_G7LAD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartate aminotransferase n=1 Tax=Medicago truncatula RepID=G7LAD1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K4M0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4M0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g31490 not represented in the dataset |
Glyma05g31490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g14720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g181000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31490.2 sequence type=transcript gene model=Glyma05g31490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCACTTGGTGTATGTTTTACAATTTGTTGGTGGAAGATGGAAATGACACTAATGAATACATAATTTGTTTTCTTCATTCATGGGTTAGATGAAAAGAAGAAGGTTGATTTGAATGTGAAAGCGGGGGGCCCATCCCACCAAACTCCCTCTACCTACAGCTGTTGAAGCTTCTCCTTCTTGATTCTTCAGTAACCCCTTCTCTCCCAAAATCTCTCTGTTCAGTTTTCATATGGCGAACACACTATATAACGGCGCCACATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAATATCGATGTTTTTTTTGTTGTTATGCGTGTATTTTATTTCTATTTTGGCAATGTGTAATCTGTTTATTCTGAAAATAATAAGCTTTGGCTACTTTTCCACAAATGAAGTGATGCAACTGTCTTATTAATGGTTTAAAATTATAATAACAAAATTGTCCTCCTTTAATGTTACATATGTTGTCTCGAAAGGGGAAGCAAATAAACAGGCGTTCAATGGCTACAA
>Glyma05g31490.1 sequence type=CDS gene model=Glyma05g31490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATGTGAGTTCTCTCCTCTCTTTTTCCCTCCAATTTCACTTCACACACCAATTTCTCTCTCTCACCCTTCGCAGAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAA >Glyma05g31490.2 sequence type=CDS gene model=Glyma05g31490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAACACACTATATAACGGCGCCACATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAA
>Glyma05g31490.1 sequence type=predicted peptide gene model=Glyma05g31490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPNPSPEPIPGLLSPRFQIPLFPPYVSSLLSFSLQFHFTHQFLSLTLRRTRAAKQPNAIAVKASSHSDFDVDLSLSPRVNAVKPSKTVAISDHATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVSSPGDEVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRERRDFLVQSFREIDGIKISEPQGAFYLFLDLSFYYGREAEGFGKIVDSESLCQYLLEVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALVPLSSAALV* >Glyma05g31490.2 sequence type=predicted peptide gene model=Glyma05g31490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANTLYNGATCRIPLRNQSLAFSRHVSRSLSFLPITRAAKQPNAIAVKASSHSDFDVDLSLSPRVNAVKPSKTVAISDHATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVSSPGDEVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRERRDFLVQSFREIDGIKISEPQGAFYLFLDLSFYYGREAEGFGKIVDSESLCQYLLEVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALVPLSSAALV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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