Glyma05g31410 - SoyBase

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Report for Sequence Feature Glyma05g31410

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36558646
stop:	36560034
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10120	AT	Annotation by Michelle Graham. TAIR10: Ethylene insensitive 3 family protein \| chr5:3169732-3171147 FORWARD LENGTH=471	SoyBase	E_val: 1.00E-132	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF04873	PFAM	Ethylene insensitive 3	JGI		ISS
UniRef100_D3YBE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene insensitive-like protein n=1 Tax=Trifolium repens RepID=D3YBE3_TRIRP	SoyBase	E_val: 2.00E-180	ISS
UniRef100_I1K4L0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4L0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g31410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31410

Paralog	Evidence	Comments
Glyma08g14630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g180300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g31410

Limit To All Plant Sequences

>Glyma05g31410.1   sequence type=CDS   gene model=Glyma05g31410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGATTCACGAAGAAATCGACCCCTTTGATCAAGAAGAACATGAAGAGGAAGAAACCGACTATGATCAGCTAAAGAAGCGGATGCAGAAGGATCGGATCCTGCTGCAGCAGATGAAGGAGAAACGCCCCAAAGAAGAGGCAGGCCAACAAGAAAAACAAGAAGCATCTAGGCGGAAGAAGATGTCAAGAGCACAAGACTCTATCCTCAAGTACATGGTGAAGATTATGGAGGTTTGCAATGCTCAAGGTTTTGTGTATGGTATTGTCCCTGAGAAGGGAAAGCCAGTGACTGGTTCTTCTGACAGCTTGCGTGAGTGGTGGAAAGAAAAGGTCAAATTTGATCAAAATGCACCAGGCGCCATTGCGAAATACATGCCACTCCTTGAAACAGATGAGTTGGATCCAAGTTCCTACATACATCTCCTTAATGACTTGCAAGACACTACTCTGAGTTCACTACTTTCTGCTCTGATGCAACATTGCATACCTCCCCAAAGAAGATTCCCTCTTGAGAGAGGCTTGGCTCCACCTTGGTGGCCCAGAGGGGCAGAGAATTGGTGGGGTGAACAAGGCTTTCTGGCCCATGAACATGGCCCACCTCCTTATAAGAAGCCCCATGACCTCAAAAAGGCTTGGAAAGTGTCTCTCTTGGCTGCAATCATCAAACACATGTCTCCTAATTTGGACAAACTTAGAAGGTTGGTGACTCAGTCCAAGACTTTGCAAGATAAGATGACAGCCAGGGACACAGCAACTTGGTCCAAGGTCATGAACCAAGAAGAAACACTGCTGCAATTGGCCAATAAATGCCTCAGAATATCTCCATCATCAGAGGAAGATGAAAACGAGTGCGAAAGCTCCACTGCTAGTACTATCATCCATGAAGGTGGCAACATTATTGAGAAAAGGAAGAGTGACCTGTTTGACTTAGATGCTGTTGTTGATAAGCTATATGCTTGTCAATACTATCAGTGTCCACAAAGTTTAACGGGTATGGGATTTCTTAACAAAAACTCAAGGATGAACCATGAGTCCCTCTGTGCTTACCGCACTAATGAAAGCCAATCTGTTCTCCTTCAGGATTCTCAGTCCAATGACACACAAATTGCAAGTGTGGATGATTGGATGATGAACTTGGAGGCAGCAAGAGCTAACCAGAATGAGAATAACCACCCTGTTGGCCATCCGATTAACGATCAGTTTAGAGATATTGCAGGAAAGACATCAGAAGAAGATTATGGATGCTTATGGCCAAAGTCCCTTGAAGATCTTGATTTGCAAGCTGCACTGAATCAGATGGACATGGACTTGAATCCAAATCCAGAGCAAGATACACCACAGGGCCAAGAAGTAACCTCAATTTGGGACTTACCCTACAAATAA

Predicted protein sequences of Glyma05g31410

Limit To All Plant Sequences

>Glyma05g31410.1   sequence type=predicted peptide   gene model=Glyma05g31410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEIHEEIDPFDQEEHEEEETDYDQLKKRMQKDRILLQQMKEKRPKEEAGQQEKQEASRRKKMSRAQDSILKYMVKIMEVCNAQGFVYGIVPEKGKPVTGSSDSLREWWKEKVKFDQNAPGAIAKYMPLLETDELDPSSYIHLLNDLQDTTLSSLLSALMQHCIPPQRRFPLERGLAPPWWPRGAENWWGEQGFLAHEHGPPPYKKPHDLKKAWKVSLLAAIIKHMSPNLDKLRRLVTQSKTLQDKMTARDTATWSKVMNQEETLLQLANKCLRISPSSEEDENECESSTASTIIHEGGNIIEKRKSDLFDLDAVVDKLYACQYYQCPQSLTGMGFLNKNSRMNHESLCAYRTNESQSVLLQDSQSNDTQIASVDDWMMNLEAARANQNENNHPVGHPINDQFRDIAGKTSEEDYGCLWPKSLEDLDLQAALNQMDMDLNPNPEQDTPQGQEVTSIWDLPYK*

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