Report for Sequence Feature Glyma05g31400
Feature Type: gene_model
Chromosome: Gm05
Start: 36548278
stop: 36553126
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g31400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39790 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) | chr4:18462316-18464584 REVERSE LENGTH=657
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR21450 Panther
UNCHARACTERIZED
JGI ISS
PF04782 PFAM
Protein of unknown function (DUF632)
JGI ISS
PF04783 PFAM
Protein of unknown function (DUF630)
JGI ISS
UniRef100_G7LAC7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP133 n=1 Tax=Medicago truncatula RepID=G7LAC7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338734 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338734 related cluster n=1 Tax=unknown RepID=UPI0002338734
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g31400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g31400
Paralog Evidence Comments
Glyma08g14620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g31400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g180200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g31400
Coding sequences of Glyma05g31400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31400.2 sequence type=CDS gene model=Glyma05g31400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTACGAACTCTAGAGCGGAAAAGAATGAAGCTTTGAGTCTGTGCAAGGAAAGAAAGAGGTTCATCAAGGTGGCTATTGATTCAAGATATGCTTTAGTAGCTGCACATGTTTCGTACATTCAATCTCTTCGAAATGTTGGCATTGCTCTCCGCAGGTATGCTGAGTCTCAGGTAGAGGTAGAGTCATCTCTTTCTATATCTAACAAAACCCCTTCTCAAACTAGTTACCCTTCTCCATCATCACCTTCTCATGTTGCTGAGGTTGAGGTTTTGGAGTCACCGTTGCACACCGAGAGTCCTCTTTCGCCTCCTGTGGCCACCACTCTTAGTTACATGAGGTCAGGGGGTAGTGCTGCTGTCACTGTTAGGATCAATGCCTTCGGTAACAACAACTATTTGGATGATGAATCCACCGTGGTTCCAATGCCTCCACCTCCACCACCTCCTCCTGAGTCAGGTGCATCTTGGGATTTCTTTGAACCTGCAGAGGACAGTGACAGCTTCAGGTTTGCAGTGCATTGTAGTGAGTCCAGAGAGTTTAGGGATGAAGAAAAGGGTGATCAATGGTTACATGTTGGTTCTGATAGGCATTGCATGATGCAACCACTCCTGGATGAGAAGTTTAGTGGAAACTTCAGCAGTGCTGCAATGGGAAATGAGTGTGGCAACTCTTATGCACATTGCCTTGATAATTCAACTGTTTCAAGAGGAGTTGAAGGTGGCAAAGGAATGGTTGATGGAGAAGTGAGAGAGCTAGAGTTGCCAAGTGCTGCAGGTGATGTGAGCCGAGCTGTTGCAAACAAGGGTGCTGGTGGAAGGTCCAGTGCAAAGAGGGAGCAAAACATGGCTGGAAAAAATGCCTCCACAGAAAGAGAGGATCCTTCAGAGTTCATCACACACAGAGCTAAAGATTTTCTCTCTAGCATAAAGGATATAGAGCATAGGTTCATTCGAGCTTCTGAATCTGGTAGGGAGGTCTTGAGGTTGTTAGAGGCTAACAAAATCAAGGTGGGATATTCTGAGGCAAAAGGGAAGTCGTCTACCACTGCTTTGTTGTCTGCTGTCCAGCCTGTTTGTTGCGGTAGAAAGGCTTCACCTGTTTTCCAGGAACCTGCCCAAAAAATTATTAGTTGGAAAAGGACAGCATCTTCTCGATCATCCTCGTCCAGGAATGCTTTGGCTACAAAAACAAAGGAAGATATTGATGATAGTGGAAGTGACTTTGTAGAAGAATTCTGTATGATTGCTGGAAGCCATTCATCCACTCTTGACAGACTATATGCCTGGGAGCGAAAACTCTATGATGAAGTAAAGGCTAGTGAATTCATAAGGAAGGACTATGATCGAAAATGTCACCAGCTTAGGCATCAATTTGCAAAAGATCAAGGCACTCATGTGATTGACAAGACCCGGTCAGTTGTGAAGGATCTGCATTCACGGTTAACAGTGGCTATATATTCTGTTGATTCAATATCTAAACGAATTGAGAGAATGAGGGATGAAGAATTGCTACCACAACTTTTGGAGTTAACAGAAGGATTGATCAGGATGTGGAAGGCTATGCTTGAATGTCATCATGCACAGTACATCACCATCTCCTTGGCATATCATTCAAGGAGCACACCAGGAACCTTGCAAGGAGATGCACTCAGAGAGATAATGACTCGGCTGCTAGAAGAAGTTGAGTTCTTTGGTCTGAGTTTTGCTAACTGGATTAACAGCCTCACCTCATATGTGGAAGCTGTCAATGCGTGGCTACAAAACTGTATACTGCAACCAAGGGAGCGTACCAAGAGCAGAAGACCATTCTCCCCTCGCCGAGTTCTGGCACCACCTATATTTGTTCTTTGCCGTGACTGGTCTGCTGGGATCAAGGCTTTACCCTCTGAGGAACTAAGTCAGGCAATCAGAAACTTTTTGTCTGATCTTCATCTGCAGACGGAGCAGCATAATGACCAACTTCTCAAGAAACAGAATTCTGTCAATGCAAGTATGGCAGAAACCGAGAGCAAAACTAATGAAGAGAATGAAGATGAGTCCACGAATTTGAGCTGCATACATGCAAGATTAACAAAGGTTCTTGATCGCCTGACCAAATTTTCTGAGGCATCATTGAAGATGTATGAAGATATCAAGCAAAAAAGTGAATCAGCTCGAAATGCATACCATAATTGCAGAACTATCAGGGCTGAAAAATTTTAA
Predicted protein sequences of Glyma05g31400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g31400.2 sequence type=predicted peptide gene model=Glyma05g31400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGATNSRAEKNEALSLCKERKRFIKVAIDSRYALVAAHVSYIQSLRNVGIALRRYAESQVEVESSLSISNKTPSQTSYPSPSSPSHVAEVEVLESPLHTESPLSPPVATTLSYMRSGGSAAVTVRINAFGNNNYLDDESTVVPMPPPPPPPPESGASWDFFEPAEDSDSFRFAVHCSESREFRDEEKGDQWLHVGSDRHCMMQPLLDEKFSGNFSSAAMGNECGNSYAHCLDNSTVSRGVEGGKGMVDGEVRELELPSAAGDVSRAVANKGAGGRSSAKREQNMAGKNASTEREDPSEFITHRAKDFLSSIKDIEHRFIRASESGREVLRLLEANKIKVGYSEAKGKSSTTALLSAVQPVCCGRKASPVFQEPAQKIISWKRTASSRSSSSRNALATKTKEDIDDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVKASEFIRKDYDRKCHQLRHQFAKDQGTHVIDKTRSVVKDLHSRLTVAIYSVDSISKRIERMRDEELLPQLLELTEGLIRMWKAMLECHHAQYITISLAYHSRSTPGTLQGDALREIMTRLLEEVEFFGLSFANWINSLTSYVEAVNAWLQNCILQPRERTKSRRPFSPRRVLAPPIFVLCRDWSAGIKALPSEELSQAIRNFLSDLHLQTEQHNDQLLKKQNSVNASMAETESKTNEENEDESTNLSCIHARLTKVLDRLTKFSEASLKMYEDIKQKSESARNAYHNCRTIRAEKF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
