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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65110 | AT | Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 2 | chr5:26009821-26012482 REVERSE LENGTH=692 | SoyBase | E_val: 0 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003995 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0003997 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0135 | KOG | Pristanoyl-CoA/acyl-CoA oxidase | JGI | ISS | |
| PTHR10909 | Panther | ELECTRON TRANSPORT OXIDOREDUCTASE | JGI | ISS | |
| PTHR10909:SF94 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00441 | PFAM | Acyl-CoA dehydrogenase, C-terminal domain | JGI | ISS | |
| PF01756 | PFAM | Acyl-CoA oxidase | JGI | ISS | |
| PF02770 | PFAM | Acyl-CoA dehydrogenase, middle domain | JGI | ISS | |
| UniRef100_I1K4K8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1K4K8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K4K8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1K4K8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g31390 not represented in the dataset |
Glyma05g31390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g180100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31390.1 sequence type=CDS gene model=Glyma05g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACACCAAACTGCGAAGCCGAGAGGCGAATCCAGAGGCTAACCCTACACCTAAACCCCACGGCGTTGGTCGCGGCGAAGCAGTTGGAGATGGCAACGTGCGCTCGCGGGAAGCTGAGCGTGGACACGCCGTCCTTGTCTAGTTACATGCGAGGGAAACACGTGGACATTCAGGAGAAGGTGTTCGATTACTTCAACGCGAACCCGCGCCTTCAAACTCCCGTTGAGATCTCCAAGGACGAGCATCGCGACCTCTGCATGAAGCAGTTAACGGGACTCGTCAGAGAAGCCGGGATTCGACCCCTCCGTTACGTAGTCGACGATCCCGCTAAGTACTTCGCCATTTTGGAAGCCGTTGGAAGCGTTGACATGTCGCTCGGGATCAAGATGGGGGTCCAGTATAGTCTTTGGGGTGGTTCTGTTCTCAATTTGGGGACCAAGAAGCATAAGGATAAGTACTTTGATGGGATTGATAACTTGGACTACCCTGGTTGTTTTGCTATGACCGAGCTTCACCATGGTTCAAATGTGCAGGGCCTCCAAACTGTTGCCACCTTTGATATAATCACAGATGAATTTATCATTAATACACCAAATGATGGTGCCATCAAATGGTGGATTGGTAATGCTGCAGTGCACGGCAAGTTTGCCACTGTTTTCGCTAGGTTGAAATTACCTACTTATGACAAAAAAGGACTTTCTGATATGGGTGTCCATGCTTTCATAGTTCCAATAAGGGATATGAAGACCCATCAACCACTTCCTGGAATTGAGATACATGATTGTGGTCATAAAGTCGGCCTCAATGGTGTGGATAATGGAGCATTGAGATTCCGCTCGGTAAGAATTCCTCGAGACAATCTTCTAAACCGTTTTGGAGATGTCTCCCGTGATGGAAAGTACACGAGTAGCCTTCCTACAGTAAATAAGCGGTTTGCCGCTACTCTAGGGGAACTTGTTGGTGGTAGGGTAGGCCTTGCGTATTCCTCAGTAAGCGTCCTGAAGGTTGCTGCCACAATTGCCATCAGATATTCTCTACTTCGTCAGCAATTTGGACCTCCAAACCAACCTGAAGTCAGTATTCTTGACTACCAGTCTCAACAGCATAAGCTTATGCCAATGCTGGCTTCAACTTATGCTTTTCATTTTGCCACGACAAATCTAGTGGAGAAATACTCTCAAATGAAAAAAACTCATGATGATGAATTAGTTGCAGATGTCCATGCCCTTTCGGCAGGTCTAAAGGCTTATGTAACATCATACACTGCAAAGTCACTCAGCATCTGTAGGGAAGCCTGTGGAGGCCATGGTTATGCTGCTGTTAATCGGTTTGGTATTTTGAGAAACGATCATGACATTTTTCAAACATTTGAAGGAGACAACACAGTTCTGCTTCAACAGGTTGCAGGTGATCTTTTGAAACAATACAAGGGAAAGTTCAAAGGTGGAACTTTCGCAGTGACATGGAACTACTTGAGAGAATCCATGAATACTTATCTGTCACAGCCAAATCCGGTTACTGCTCGGTGGGAAGGCGAAGACCATTTACGAGATCCTAAATTTCAATTGGATGCGTTCAGATACCGAACATCTAGATTACTTCAAAGTGTTGCTGTACGACTTCGAAAGCATTCTAAATCTCTTGGGGATTTTGGTGCATGGAATAGATGTTTGAATCACCTTTTGACACTTGCAGAGTCACATATTGAGTCAGTCATCCTTGCTAAATTTATTGAAGCCGTGCAGAGCTGTCCCGATCCAAGCTCCCAAGCTGCTCTGAAGCTCGTCTGTGATCTTTATGCTCTGGATAGAATATGGAATGACATTGGAACCTACCGAAATGTTGACTATGTGGCTCCCAACAAAGCCAAGGCAATCCACAAGCTCGCGGAGTATCTTAGTTTCCAAGTGAGGAATATTGCAAGGGAACTTGTTGATGCATTTGATCTTCCGGATCACGTTACACGGGCCCCCATTGCCAAGCGGTCAGGGGCCTACTCGCAGTACACACAATATGTGGGATTTTAA
>Glyma05g31390.1 sequence type=predicted peptide gene model=Glyma05g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTPNCEAERRIQRLTLHLNPTALVAAKQLEMATCARGKLSVDTPSLSSYMRGKHVDIQEKVFDYFNANPRLQTPVEISKDEHRDLCMKQLTGLVREAGIRPLRYVVDDPAKYFAILEAVGSVDMSLGIKMGVQYSLWGGSVLNLGTKKHKDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTVATFDIITDEFIINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTYDKKGLSDMGVHAFIVPIRDMKTHQPLPGIEIHDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTVNKRFAATLGELVGGRVGLAYSSVSVLKVAATIAIRYSLLRQQFGPPNQPEVSILDYQSQQHKLMPMLASTYAFHFATTNLVEKYSQMKKTHDDELVADVHALSAGLKAYVTSYTAKSLSICREACGGHGYAAVNRFGILRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKGKFKGGTFAVTWNYLRESMNTYLSQPNPVTARWEGEDHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKSLGDFGAWNRCLNHLLTLAESHIESVILAKFIEAVQSCPDPSSQAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAKAIHKLAEYLSFQVRNIARELVDAFDLPDHVTRAPIAKRSGAYSQYTQYVGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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