Report for Sequence Feature Glyma05g31370
Feature Type: gene_model
Chromosome: Gm05
Start: 36524040
stop: 36525786
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g31370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39780 AT
Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr4:18458216-18459034 REVERSE LENGTH=272
SoyBase E_val: 1.00E-78 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF00847 PFAM
AP2 domain
JGI ISS
UniRef100_I1K4K5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4K5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q4QYE1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DREB2 n=1 Tax=Glycine max RepID=Q4QYE1_SOYBN
SoyBase E_val: 2.00E-164 ISS
Expression Patterns of Glyma05g31370
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g31370
Paralog Evidence Comments
Glyma08g14600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g31370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g179900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g31370
Coding sequences of Glyma05g31370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31370.1 sequence type=CDS gene model=Glyma05g31370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAACCGCTATAGGCATGTACAGCAACAACAACATCGTACCGGATTTCCTAGATCCGTATAGTGAAGAACTGATGAAAGCACTTATGCCTTTTATGAAAAGTGATTATTTCTCTGCCTCTTCTTCTTCTTCTTCACGCGAATCACACCCTTCTCCTCTTATTCCATCTAATTCTCTCCCCTCCTCCAACCAAATCAGGCTCAACCAACTCACCCAAGACCAAATTCTCCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCACGTGGCCCAAGGCCAAGCCCACCTGGGCCCAAAACGCGTCCCTATGAAACACGCCGGCACGGCCGCGAAAGCCGCGAAGCTCTACCGCGGGGTGCGGCAACGGCATTGGGGCAAGTGGGTCGCCGAAATCAGACTCCCCAAGAACCGCACGCGCCTCTGGCTCGGAACATTCGACACCGCAGAGGAAGCAGCATTAGCGTACGACAACGCTGCGTTTAAGCTCAGAGGCGAGTTCGCGCGTCTCAATTTCCCTCATCTACGACACCACGGAGCGTTTGTTTTCGGTGAGTTCGGAGATTACAGACCTCTACCTTCTTCCGTGGATTCGAAGCTGCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAGGAAAAGCCGTGTTGCTCTGTCGAAGACGTGAAGCCCGTGATACACGCTGCTGAGCTGGCAGAGGTGGAGTCTGACGTGGCAAAATTGAACGCTGAATATGTTTATCCCGAGTTCGAGGATTTTAAGGTCGAGAACGAGAACCCAATGTTGTCCTCGTCTGTGTCTGGCGAATCTTCTTCGCCTGAATCTGGTGTTACTTTCTTGGATTTCTCGGACTTCTCGGATTCTAATAATCAGTGGGATGAAATGGAGAATTTTGGGTTGGAGAAGTTCCCTTCTGTGGAGATTGATTGGGCGGCAATATGA
Predicted protein sequences of Glyma05g31370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g31370.1 sequence type=predicted peptide gene model=Glyma05g31370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTAIGMYSNNNIVPDFLDPYSEELMKALMPFMKSDYFSASSSSSSRESHPSPLIPSNSLPSSNQIRLNQLTQDQILQIQAQIHIQQQHVAQGQAHLGPKRVPMKHAGTAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHHGAFVFGEFGDYRPLPSSVDSKLQAICESLAKQEEKPCCSVEDVKPVIHAAELAEVESDVAKLNAEYVYPEFEDFKVENENPMLSSSVSGESSSPESGVTFLDFSDFSDSNNQWDEMENFGLEKFPSVEIDWAAI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
