Glyma05g31341 - SoyBase

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Report for Sequence Feature Glyma05g31341

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36462146
stop:	36464849
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31341

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39720	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr4:18429992-18430864 REVERSE LENGTH=290	SoyBase	E_val: 4.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1K4K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4K4_SOYBN	SoyBase	E_val: 8.00E-133	ISS
UniRef100_Q6AVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ	SoyBase	E_val: 5.00E-08	ISS

Proteins Associated with Glyma05g31341

Locus	Gene Symbol	Protein Name
	VQ18	VQ motif containing protein gene 18

Expression Patterns of Glyma05g31341

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g31341 not represented in the dataset	Glyma05g31341 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31341

Paralog	Evidence	Comments
Glyma08g14581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31341 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g179700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31341

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g31341

Limit To All Plant Sequences

>Glyma05g31341.1   sequence type=CDS   gene model=Glyma05g31341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGCCAACACTAGCGGGAGCTTGCAATCCTCAAGCGGCGCCGATGAAGAGTACGATTCACGCGCCGAATCATCACCACTCTCTGCGTTCTTAACCAACCAACCACAACCACCACCACCAAGCCAAGTTGTTCGCTTTATTCTACCATCACAACAACAACAGCACCATCACCAAAACACCCACATGTTCGACCCTTTATCAAACTACTTGGATCCCATCACACAAAGTTCAACATCACTATTAAACCTTGACGTGATGTGGTCCAAAACAGGTAGATCCGAATCAAACCAAACCGATCTTGTTGGGTTGATACCTTGTTCATCATCCTCAGTACCCTCGCCACATAACGAAGCTTTTGTGTCAAGTCAAACACGAGGGAACAATAGTGGTGCTTTTCCTACCTTGCCTCCAGAAAGTGGTTCCCGCGGACTAATGCTTTCAGTGTCAGCCGCCAACAATGATCAGATTCAAACCCACAACAACAACAACAACTGCAACGTGGTTCGAAACCCGAAGAAACGGTCAAGAGCTTCTAGGCGTGCACCTACCACTGTGCTAACCACAGACACCACCAATTTCCGAGCCATGGTTCAGGAATTCACTGGCATCCCAGCACCACCCTTCACATCCTCGTCTTTCCCGAGAACAAGGTTGGATCTCTTTGCTTCCACCGCAACACCAACTTTGAGATCCAACGTTAACGTTAACCCTTTCGACCCTCCAACACAACCTCCTTACCTTCTTCGCCCCTTTGCACAAAAACTCCAACTTCGAAGTCTTCACCCGTTTCCTCCCTCCTTTTCCAACACTTTACCACCACCTTCAACTAACTCTCCTACTAATTCAACTTCCATTAACTACCACCAACAACAACAACAACTATCTGAGCATTTCGGCCTTGCGAAACAGCCTTTCAACTTTAACAACACCACCCCAGACACTAGTACTCTTGAGGCATATCATCATCCCAAGTACACTCTTGGTAACTCTTCTTCTGTTCTTGTCTCCAGAACACAACAACAACACTCCTTGGAAATTCCGCCGAATCTCAAAATGGGGTTGTATGAGGAACTGGAACTGAGACACGACCATGTTAACACCGACCTCGGATGTCTTCATCAGAACATGGTTTCGTCAACATCAGTTGGAGTGGGAGCATTGTCAAGTGACAACAACAACAACTTGAGTAATGCTACTAATTCTTCAACGGAATGGGCCCAGAGAACGGGCACCATTACCAACAATGATTGCGATCACGGAAGAGGAGGAGGAGCTCTCAGTGGCACTGTTAACTACAACGACATTGGGGAGGGAGCTGTAGTCACTAATGGCAAAGTACACTACTCAGCTTCTTCATCGGATTTTCATGGAGAGAAGGGACCAGACTTCACTGTAACTACTGCAGCCAGAACTCAAGGTATGGTGGAATCCTGGATTAATTGTTCTTCTGATTAA

Predicted protein sequences of Glyma05g31341

Limit To All Plant Sequences

>Glyma05g31341.1   sequence type=predicted peptide   gene model=Glyma05g31341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSANTSGSLQSSSGADEEYDSRAESSPLSAFLTNQPQPPPPSQVVRFILPSQQQQHHHQNTHMFDPLSNYLDPITQSSTSLLNLDVMWSKTGRSESNQTDLVGLIPCSSSSVPSPHNEAFVSSQTRGNNSGAFPTLPPESGSRGLMLSVSAANNDQIQTHNNNNNCNVVRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSFPRTRLDLFASTATPTLRSNVNVNPFDPPTQPPYLLRPFAQKLQLRSLHPFPPSFSNTLPPPSTNSPTNSTSINYHQQQQQLSEHFGLAKQPFNFNNTTPDTSTLEAYHHPKYTLGNSSSVLVSRTQQQHSLEIPPNLKMGLYEELELRHDHVNTDLGCLHQNMVSSTSVGVGALSSDNNNNLSNATNSSTEWAQRTGTITNNDCDHGRGGGALSGTVNYNDIGEGAVVTNGKVHYSASSSDFHGEKGPDFTVTTAARTQGMVESWINCSSD*

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