Glyma05g31330 - SoyBase

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Report for Sequence Feature Glyma05g31330

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36452806
stop:	36455568
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39740	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr4:18435586-18437095 REVERSE LENGTH=276	SoyBase	E_val: 1.00E-98	ISS
GO:0055070	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion homeostasis	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12151	Panther	SCO1/SENC	JGI		ISS
PF02630	PFAM	SCO1/SenC	JGI		ISS
UniRef100_D7M949	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Electron transport SCO1/SenC family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M949_ARALL	SoyBase	E_val: 1.00E-96	ISS
UniRef100_UPI000233A3D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A3D9 related cluster n=1 Tax=unknown RepID=UPI000233A3D9	SoyBase	E_val: 2.00E-148	ISS

Expression Patterns of Glyma05g31330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31330

Paralog	Evidence	Comments
Glyma08g14570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g31330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g31330

Limit To All Plant Sequences

>Glyma05g31330.2   sequence type=CDS   gene model=Glyma05g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGCTGCTGTTCTAGGATTTGCCGGGCTTGCAGCTTTTTTTCACTACAATGATGAGAGGAGAGCGGTTCCCAAAGGTCATCAGGGTGGTGGCCTCAGAAATGTTGCCAATGGACCCATAATTGGGGGTCCATTTACACTAATTAATACAGAGAAACAGGCAATTACAGAACATAATTTTCTTGGGAATTGGGTCCTGCTCTACTTTGGCTATACCTCATCCCCCGATTGTGGGCCAGAGCAAGTCCAAATTATGGCCAAGGCAATTGATATATTAGAATCAAAACAGAATCTTAAGATTCTACCAGTATTTGTTTCCACTGATCCTCAACGTGATACGCCCTCACAACTTCGTGCCTACCTTAAAGAGTTTGACTCAAGAATCATAGGATTAACTGGACCTGTTGCAGCTATTAGGCAGATGGCTCAAGAATATTGTTTTTACTTTAAAAAGGTAGAAGAGGATGGCAGTGATTATCTTGTTGACTGTTCTCACAACATGTATTTGCTGAATCCTAAAATGGAGGTTACGAGATGCTTTGGTGTCGAGTATAATGCAGAGGAGTTGTCAGAAGTGATAGGGAAAGAGCTGAACAGAAACCCCTCTTAA

Predicted protein sequences of Glyma05g31330

Limit To All Plant Sequences

>Glyma05g31330.2   sequence type=predicted peptide   gene model=Glyma05g31330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PAAVLGFAGLAAFFHYNDERRAVPKGHQGGGLRNVANGPIIGGPFTLINTEKQAITEHNFLGNWVLLYFGYTSSPDCGPEQVQIMAKAIDILESKQNLKILPVFVSTDPQRDTPSQLRAYLKEFDSRIIGLTGPVAAIRQMAQEYCFYFKKVEEDGSDYLVDCSHNMYLLNPKMEVTRCFGVEYNAEELSEVIGKELNRNPS*

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