SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10200 | AT | Annotation by Michelle Graham. TAIR10: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:3202378-3204367 FORWARD LENGTH=631 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG4555 | KOG | TPR repeat-containing protein | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF132 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_B9T4N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein 70 (HSP70)-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9T4N9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K4J7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4J7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g31280 not represented in the dataset |
Glyma05g31280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g14500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g179000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g31280.2 sequence type=transcript gene model=Glyma05g31280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACCAAAAAATAAAATAAAATCAATCATTTAAAATTTATACTTGAACAGTACAGTACAGTGTGTAGTAGAACCCCAGCATTATTCCGTTGTCTTCCTTCTCCGTTGCTCACTCTCTTTCTCTCTCTCTCTCTCTGGAGTTCTAACCTAGATCAAAGATAACGGTGCTGTGAGAAAAGCGTGAGAGAGAAGGAGAGAGCCAAAAATTCATAAAGCATCCGAGGAACACGTGAATTCCGACATGTAACGGTCGAAAGTTGTAACCCACGACGACGAATTTGGATCTGTCGTTTACAACCATTGCCGATCTCCGCCTTAAACGACGCTTCACTGAAACCACCAGACTCTTCCTCCTCACCGTTACAACTTCACAGCTTCTGTGTAGTGTTCTACTTTTCCCGTTACTGTCAGAAGACCGTTGAACAACGAGGTTTTGAAGTGGTTTTCTTTCTTCAGCTGCCTGATGAGGAATTGATTTGTTGATCTCCGAGGTTGTTGTTCTAATTTATCGAGCATGGATAAGGTTTCATCAGACTGTCCGTACCCGGGATGCTTCTTTTGTGTCATGAAGGAAGGGAATCCAAGCAAGCGCAGAGCAAGTGTACTGAAATTCTTTAGAGAACTTCCGTGTCAAGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGAACACTGCTATGGCACACCCAAATGACCCGGAGTTCCTAGAGCTAGGAATATTTGAATGCATGTCTGCTCTCATATGGAAGGGACTGAAGAACAGGCGCTGGCTTTCTCATGACCAAAATATATATATTCCTTATTATGCAGCTCATATCATCGGTTCCTACACAATGAATATGGAAGAATTTGCAGAAAGTGCCGTGCATGCTGGGGTCATTCCTCCTTTGGTCGAGCTTTTACGAGGTAGATTAACTTGGGTTGAGCAGAGGGTGGCGGTTAGAGCATTGGGACACTTGGCTACATATGCCAGCACTTTTCCAGCCATAGCAAGTCATGGTGAAATTCTTGAGCTCTCCATCCAATTGGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCAATATGTTGATAGAAGACTTAGCTATCATTGTGATCTGCTTACACGTGGCATGGGTGGTGTTGAAATGGAGTCCAGGAAGGCTGAGGAATGGGCTAGTCAGTTGCAGTGTTGGTCCCTTCAGCTAATTAATTGCTTTGCTTTTAAACATGAATTTCTTCCTACCATATGCAAACCCGAATTTCTGATAAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCTGCTGGTATTGGTTTATTAAGAACAATTTGTCATCAAAAACTTGGTAGGGGGCCTGTTGCCAGTTGCCCTGGTATTATTGATGCATTGTGTAATATTGCTCGGTCTTCAGATGATTGGCAGTATATGGCTATTGATTGCCTTCTATGGCTGCTTGAAGATCCCAATACATGTCACAAGGTGATTGATAAAGTGGTGCCTGCATTAGTTGACCTTGCTGAGATTACAACTCTGGGTGATCATAAAAAGCTTGGCGATTTAGTTGTTAATGTTCTTCAAGAGTGCATCCAGTCTCAAGGGTCAGGACGAAGCTCGATTAGTAGTCATACTAAAGAGCAGATTGAGGATATTTTAAATTCAAAGCAGAGATTAAAGTGGGAAAAGAATATGCCCAAGGAAGATCTACATATTAAGCAGGCTGCAGCGCTGGTTGTCAAACTTGAAGGAAATTCTCTGTTCTCATCTGGAAGTATTGCTGGAGCTGCATCAAAATACTCTGAAGCTTTGGCATTGTGTCCTATGAGATCAAGGAAGGAGAGAGTTGTTCTATACAGTAATCGTGCTCAATGCCACCTTTTGCTGCAACAACCTTTGGCTGCCATAAGTGATGCTACCCGTGCACTATGTCTCCATAAACCTGTCAATCGTCATGCCAAAAGCCTTTGGAGACGAGCACAAGCTTATGACATGCTTGGATTAGCGAAAGAGAGTTTATTGGATGCTATTTTATTTATAAATGAGTGCTCTCAGTCAAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCAGATTATGCCGAGCGTTTAGTTAAGAAGCAGATGCGTGCTGCTTGGTTATTTCGAGAGGCAGCTATTAAGCATGGTGGGGTCCATAGTCAGGGTGATGGCGGTGATATGTATGGCCCAGAGACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGAAATGATGGACGGGATGACATGGGCGAAGACGACGATGGTGATTGGAATAATGATGATGAGAGGAAAAATTATGACAAACCCTCGATGAAAGCATCACTTGACCACCCTTCGGAACGCTGATAAAACCAGACGTCCTGTACTTCTTGCCTTGGTACTGTGTCTGATAAAACCATTGAATAGTTCAGATCGTTGCCCTTTATATGATATAAAGCATGGATACAATGTGCAGCTTGCGGAAGAAGAACCTTGACAATAGTAATCCTTGCATTTAATTGTTCTCTCCAGCACGAATGAAGCAGGGTTGGCTGCTGTGACTAACTCTACATGCTTTGTGGGATTTAAAAGAGAAAATTCTAAGTCGCTCGTTGTAGTAAGTGGCAGGTTGAAAGTGATGAGTGAGTTTTTGGTCTTACGATTATTTGAGGTTGATAATTTATATAAACTTTTCCATGTTCCATATTTGTTCTCCCCATCGTTCTTGTCAAGTGTAAAAATTGAAGATTTTAAGTTTGGAGAACTACATAGCGTTTGGAGGATGTGAAGTTTTTTTTTTTTTCCTTTATTTTCCCCGGAGGTTTGTGTATATAAATCCTTTGTGCTTAAGTTTTCTGAGTCCGTTTCCACTATTATTTTGGTTGCAGCTTGCCTGATTATTTGTGCATGTTATAGTT
>Glyma05g31280.1 sequence type=CDS gene model=Glyma05g31280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAGGTTTCATCAGACTGTCCGTACCCGGGATGCTTCTTTTGTGTCATGAAGGAAGGGAATCCAAGCAAGCGCAGAGCAAGTGTACTGAAATTCTTTAGAGAACTTCCGTGTCAAGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGAACACTGCTATGGCACACCCAAATGACCCGGAGTTCCTAGAGCTAGGAATATTTGAATGCATGTCTGCTCTCATATGGAAGGGACTGAAGAACAGGCGCTGGCTTTCTCATGACCAAAATATATATATTCCTTATTATGCAGCTCATATCATCGGTTCCTACACAATGAATATGGAAGAATTTGCAGAAAGTGCCGTGCATGCTGGGGTCATTCCTCCTTTGGTCGAGCTTTTACGAGGTAGATTAACTTGGGTTGAGCAGAGGGTGGCGGTTAGAGCATTGGGACACTTGGCTACATATGCCAGCACTTTTCCAGCCATAGCAAGTCATGGTGAAATTCTTGAGCTCTCCATCCAATTGGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCAATATGTTGATAGAAGACTTAGCTATCATTGTGATCTGCTTACACGTGGCATGGGTGGTGTTGAAATGGAGTCCAGGAAGGCTGAGGAATGGGCTAGTCAGTTGCAGTGTTGGTCCCTTCAGCTAATTAATTGCTTTGCTTTTAAACATGAATTTCTTCCTACCATATGCAAACCCGAATTTCTGATAAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCTGCTGGTATTGGTTTATTAAGAACAATTTGTCATCAAAAACTTGGTAGGGGGCCTGTTGCCAGTTGCCCTGGTATTATTGATGCATTGTGTAATATTGCTCGGTCTTCAGATGATTGGCAGTATATGGCTATTGATTGCCTTCTATGGCTGCTTGAAGATCCCAATACATGTCACAAGGTGATTGATAAAGTGGTGCCTGCATTAGTTGACCTTGCTGAGATTACAACTCTGGGTGATCATAAAAAGCTTGGCGATTTAGTTGTTAATGTTCTTCAAGAGTGCATCCAGTCTCAAGGGTCAGGACGAAGCTCGATTAGTAGTCATACTAAAGAGCAGATTGAGGATATTTTAAATTCAAAGCAGAGATTAAAGTGGGAAAAGAATATGCCCAAGGAAGATCTACATATTAAGCAGGCTGCAGCGCTGGTTGTCAAACTTGAAGGAAATTCTCTGTTCTCATCTGGAAGTATTGCTGGAGCTGCATCAAAATACTCTGAAGCTTTGGCATTGTGTCCTATGAGATCAAGGAAGGAGAGAGTTGTTCTATACAGTAATCGTGCTCAATGCCACCTTTTGCTGCAACAACCTTTGGCTGCCATAAGTGATGCTACCCGTGCACTATGTCTCCATAAACCTGTCAATCGTCATGCCAAAAGCCTTTGGAGACGAGCACAAGCTTATGACATGCTTGGATTAGCGAAAGAGAGTTTATTGGATGCTATTTTATTTATAAATGAGTGCTCTCAGTCAAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCAGATTATGCCGAGCGTTTAGTTAAGAAGCAGATGCGTGCTGCTTGGTTATTTCGAGAGGCAGCTATTAAGCATGGTGGGGTCCATAGTCAGGGTGATGGCGGTGATATGTATGGCCCAGAGACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGAAATGATGGACGGGATGACATGGGCGAAGACGACGATGGTGATTGGAATAATGATGATGAGAGGAAAAATTATGACAAACCCTCGATGAAAGATATAAAGCATGGATACAATGTGCAGCTTGCGGAAGAAGAACCTTGA >Glyma05g31280.2 sequence type=CDS gene model=Glyma05g31280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAGGTTTCATCAGACTGTCCGTACCCGGGATGCTTCTTTTGTGTCATGAAGGAAGGGAATCCAAGCAAGCGCAGAGCAAGTGTACTGAAATTCTTTAGAGAACTTCCGTGTCAAGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGAACACTGCTATGGCACACCCAAATGACCCGGAGTTCCTAGAGCTAGGAATATTTGAATGCATGTCTGCTCTCATATGGAAGGGACTGAAGAACAGGCGCTGGCTTTCTCATGACCAAAATATATATATTCCTTATTATGCAGCTCATATCATCGGTTCCTACACAATGAATATGGAAGAATTTGCAGAAAGTGCCGTGCATGCTGGGGTCATTCCTCCTTTGGTCGAGCTTTTACGAGGTAGATTAACTTGGGTTGAGCAGAGGGTGGCGGTTAGAGCATTGGGACACTTGGCTACATATGCCAGCACTTTTCCAGCCATAGCAAGTCATGGTGAAATTCTTGAGCTCTCCATCCAATTGGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCAATATGTTGATAGAAGACTTAGCTATCATTGTGATCTGCTTACACGTGGCATGGGTGGTGTTGAAATGGAGTCCAGGAAGGCTGAGGAATGGGCTAGTCAGTTGCAGTGTTGGTCCCTTCAGCTAATTAATTGCTTTGCTTTTAAACATGAATTTCTTCCTACCATATGCAAACCCGAATTTCTGATAAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCTGCTGGTATTGGTTTATTAAGAACAATTTGTCATCAAAAACTTGGTAGGGGGCCTGTTGCCAGTTGCCCTGGTATTATTGATGCATTGTGTAATATTGCTCGGTCTTCAGATGATTGGCAGTATATGGCTATTGATTGCCTTCTATGGCTGCTTGAAGATCCCAATACATGTCACAAGGTGATTGATAAAGTGGTGCCTGCATTAGTTGACCTTGCTGAGATTACAACTCTGGGTGATCATAAAAAGCTTGGCGATTTAGTTGTTAATGTTCTTCAAGAGTGCATCCAGTCTCAAGGGTCAGGACGAAGCTCGATTAGTAGTCATACTAAAGAGCAGATTGAGGATATTTTAAATTCAAAGCAGAGATTAAAGTGGGAAAAGAATATGCCCAAGGAAGATCTACATATTAAGCAGGCTGCAGCGCTGGTTGTCAAACTTGAAGGAAATTCTCTGTTCTCATCTGGAAGTATTGCTGGAGCTGCATCAAAATACTCTGAAGCTTTGGCATTGTGTCCTATGAGATCAAGGAAGGAGAGAGTTGTTCTATACAGTAATCGTGCTCAATGCCACCTTTTGCTGCAACAACCTTTGGCTGCCATAAGTGATGCTACCCGTGCACTATGTCTCCATAAACCTGTCAATCGTCATGCCAAAAGCCTTTGGAGACGAGCACAAGCTTATGACATGCTTGGATTAGCGAAAGAGAGTTTATTGGATGCTATTTTATTTATAAATGAGTGCTCTCAGTCAAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCAGATTATGCCGAGCGTTTAGTTAAGAAGCAGATGCGTGCTGCTTGGTTATTTCGAGAGGCAGCTATTAAGCATGGTGGGGTCCATAGTCAGGGTGATGGCGGTGATATGTATGGCCCAGAGACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGAAATGATGGACGGGATGACATGGGCGAAGACGACGATGGTGATTGGAATAATGATGATGAGAGGAAAAATTATGACAAACCCTCGATGAAAGCATCACTTGACCACCCTTCGGAACGCTGA
>Glyma05g31280.1 sequence type=predicted peptide gene model=Glyma05g31280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKVSSDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPCQDDDGQVLPISGLWNTAMAHPNDPEFLELGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYASTFPAIASHGEILELSIQLAMSSLEIVYSHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKHEFLPTICKPEFLIKLPGMWGGLVNENSPAGIGLLRTICHQKLGRGPVASCPGIIDALCNIARSSDDWQYMAIDCLLWLLEDPNTCHKVIDKVVPALVDLAEITTLGDHKKLGDLVVNVLQECIQSQGSGRSSISSHTKEQIEDILNSKQRLKWEKNMPKEDLHIKQAAALVVKLEGNSLFSSGSIAGAASKYSEALALCPMRSRKERVVLYSNRAQCHLLLQQPLAAISDATRALCLHKPVNRHAKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHSQGDGGDMYGPETDDSEWETASESDIGNDGRDDMGEDDDGDWNNDDERKNYDKPSMKDIKHGYNVQLAEEEP* >Glyma05g31280.2 sequence type=predicted peptide gene model=Glyma05g31280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKVSSDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPCQDDDGQVLPISGLWNTAMAHPNDPEFLELGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESAVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYASTFPAIASHGEILELSIQLAMSSLEIVYSHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKHEFLPTICKPEFLIKLPGMWGGLVNENSPAGIGLLRTICHQKLGRGPVASCPGIIDALCNIARSSDDWQYMAIDCLLWLLEDPNTCHKVIDKVVPALVDLAEITTLGDHKKLGDLVVNVLQECIQSQGSGRSSISSHTKEQIEDILNSKQRLKWEKNMPKEDLHIKQAAALVVKLEGNSLFSSGSIAGAASKYSEALALCPMRSRKERVVLYSNRAQCHLLLQQPLAAISDATRALCLHKPVNRHAKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHSQGDGGDMYGPETDDSEWETASESDIGNDGRDDMGEDDDGDWNNDDERKNYDKPSMKASLDHPSER*
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