Glyma05g31080 - SoyBase

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Report for Sequence Feature Glyma05g31080

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36294738
stop:	36300675
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g31080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22360	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein \| chr2:9498162-9500459 FORWARD LENGTH=442	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0715	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24076	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24076:SF80	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF00684	PFAM	DnaJ central domain (4 repeats)	JGI		ISS
PF01556	PFAM	DnaJ C terminal region	JGI		ISS
UniRef100_G7J3Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone dnaJ n=1 Tax=Medicago truncatula RepID=G7J3Q2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K4I4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4I4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g31080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31080

Paralog	Evidence	Comments
Glyma08g14290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g177100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g31080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g31080

Limit To All Plant Sequences

>Glyma05g31080.3   sequence type=transcript   gene model=Glyma05g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGAATGGAGAAAGGAAGGAAATAAGTTAGGGGCGAGGCTGGCATTTTAATTTTAATAACCACAATAAATCAAACGGCGAGGAAGAACCCAAGGGAGAAAAGCAATATTAGGGTGTCCATCATCAAATATCAAATTATCAATTGCAAAGCAATAGCCTCATCCTCTTCAACTAAGTGTTCACTGCGCTCTCTCTCAGGTTAATAAAAAGGGAACCACAACTACCACCAGTTAGCAATGAAGTCATAGGTCTTCAAATCTGCATGGTGTGCAAGTCTCCCGGGATGTGACAAGTCTTTCCTGATAGTAGGGTAATAGAAGTGACAAGTTGTTAGTGATAGTAACTCAGGCCCTCGGAATCTTCAGAGAAGCTAGCAGAAGTTCATCAGAGAAGGTTACATATTAGATGGCAATAACACCTTTTGGTAGTACATCTTCTGCACAATGGGGAATTCATCCTCAGCTATTACTAAGATCCAGTATCACAGGAAAGTTTGCACCATCCAGCCACAAGGTAAGCTTTATGACTGCAACAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTGCTCAATGTGGGTGCGCCCCAAACTTTTAATCGTCGCAAGGGATCGAGGTTGATTGTTAGAGCTAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAATTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGCTGAGGAAATCAAAACGGATAAGCCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTGAGGGTCCGGAATGAGGGGAATGCTGGAAGGAGAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACAGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATTCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACGGGTAGGAGATAAGATTTTGTTGGAAGCTGTGTATCTATCCAAATATTTCTACTTCTTCAAATATTCTTCTTTCTCGGATGCGTCATTCTTGATTACACATTTACTGAGGACAGCTTAACAGCTATTTTACTCTGGGAGGGATTAAATTGTGTTGGTGGAGGTTGTTTATTTGTCCTTGGAAACAGGAGATGAAGAGCAGAAGAACTTAGAGATCTTTTTCTTCGTTGGAACTTAAACTCTTTTTGTAATTTATTTTGGGGTGGGGTGATATTGAATTATGCTTTAGGTTCAATGCTATCTTTATTTCCAAAAAAATAGATGCTCTGAGAACAAAGCAAATAATTATTATTTAATCCCATATATCGAAAGATTATATATTCCTTGTTACCACACATGCACTATTGGAAGTTGAGGACAGTTGCAGATGTTGAGGGATGCTCTTATTAACCTTAGGTGGCAACTTTTTTTTTTACTTTTTCTTTCTTCTTTGTTGGGGGAATGTTGCAA

Coding sequences of Glyma05g31080

Limit To All Plant Sequences

>Glyma05g31080.2   sequence type=CDS   gene model=Glyma05g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATAACACCTTTTGGTAGTACATCTTCTGCACAATGGGGAATTCATCCTCAGCTATTACTAAGATCCAGTATCACAGGAAAGTTTGCACCATCCAGCCACAAGGTAAGCTTTATGACTGCAACAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTGCTCAATGTGGGTGCGCCCCAAACTTTTAATCGTCGCAAGGGATCGAGGTTGATTGTTAGAGCTAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAATTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGCTGAGGAAATCAAAACGGATAAGCCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTGAGGGTCCGGAATGAGGGGAATGCTGGAAGGAGAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACAGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATTCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACGGGTAGGAGATAA

>Glyma05g31080.3   sequence type=CDS   gene model=Glyma05g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATAACACCTTTTGGTAGTACATCTTCTGCACAATGGGGAATTCATCCTCAGCTATTACTAAGATCCAGTATCACAGGAAAGTTTGCACCATCCAGCCACAAGGTAAGCTTTATGACTGCAACAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTGCTCAATGTGGGTGCGCCCCAAACTTTTAATCGTCGCAAGGGATCGAGGTTGATTGTTAGAGCTAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAATTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGCTGAGGAAATCAAAACGGATAAGCCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTGAGGGTCCGGAATGAGGGGAATGCTGGAAGGAGAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACAGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATTCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACGGGTAGGAGATAA

Predicted protein sequences of Glyma05g31080

Limit To All Plant Sequences

>Glyma05g31080.2   sequence type=predicted peptide   gene model=Glyma05g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAITPFGSTSSAQWGIHPQLLLRSSITGKFAPSSHKVSFMTATSSSFFSRDSTLLNVGAPQTFNRRKGSRLIVRANADYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRLRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKDNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGRR*

>Glyma05g31080.3   sequence type=predicted peptide   gene model=Glyma05g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAITPFGSTSSAQWGIHPQLLLRSSITGKFAPSSHKVSFMTATSSSFFSRDSTLLNVGAPQTFNRRKGSRLIVRANADYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRLRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKDNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGRR*

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