Report for Sequence Feature Glyma05g31060
Feature Type: gene_model
Chromosome: Gm05
Start: 36284700
stop: 36285672
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g31060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23850 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8425981-8427045 REVERSE LENGTH=354
SoyBase E_val: 1.00E-28 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KSZ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSZ6_SOYBN
SoyBase E_val: 2.00E-171 ISS
Expression Patterns of Glyma05g31060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g31060
Paralog Evidence Comments
Glyma08g14270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g31060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g176900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g31060
Coding sequences of Glyma05g31060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31060.2 sequence type=CDS gene model=Glyma05g31060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAGTGAAAGCAAGCAAGTTAAGCAGAAGCTGGGGGTCTTGGATATCCTCAAGGAAGCTGTAACATTTTATGCCAGCAACATCAACTTCATCATCTTCACCTTTCTCACTTCCCTTCCTTTCTTTTTTGTCATGGTTTACTTTGAAACTTTGTTCCAGCAAACTATGGTTGAGACCCCAGAAATTATATCACTTCTACCTTTTAAGGAACAAAATTATCTATATTACCATTTTGCATATCATCCTCACATTTATGGGGTCGTCGACACACCTGGTAAAAGTTTTAGTGAGGATTATTTGCCTGTTTTGATTCAACTTGGATTCATTTACTTGGTGCCTCTTCATGTTCTAGGGCTCTGCTCTGCGGTTGTAACTATGGATTCGGCTTCAAAGCTGCGCTCAGAAGAGAATAACATTAGTCTCAAGGATATGTTTAAAAGATCCATTGACATATCAATAATGAAAGGCACATTTATAACTTCTTTGTATATGCTCTTTTGGTCATCTTGTCTCTTGATTGCATTCCCATGGACAGTAAATAACTGTTATATTTTCTTCAGGGGTTTTGGTTTCTACATATTATTTGCAGTAATTTGCTATGTAGCACTTGCAAAGCTATTGATGGTATATTTGGAATGGATTGTGGATGGTATATATGCTATTGGGGCTTTGCGAGTTTCGTATTACCTCAGCACTGGTAATCAGAAGAGAGGACTACTTTTGATGCTTGTTTTCTTCGCTTTGGGACTTTGTTTAAGGTTGTCATGTGTCTCCCTTGAATGCTATAAAGGAGGGTACGGGATATTTGTACAAATTGGGCTCCTCACTGTGTTAAATACACTGAAATGGGTGTCGTGCATGATTTACTTTTCTGATTGCAAGGAGAGGAAAATGGAGAAGAAAGTTGATGAGGAATCAGGAAAAGATCTTGCAAAATGA
Predicted protein sequences of Glyma05g31060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g31060.2 sequence type=predicted peptide gene model=Glyma05g31060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESESKQVKQKLGVLDILKEAVTFYASNINFIIFTFLTSLPFFFVMVYFETLFQQTMVETPEIISLLPFKEQNYLYYHFAYHPHIYGVVDTPGKSFSEDYLPVLIQLGFIYLVPLHVLGLCSAVVTMDSASKLRSEENNISLKDMFKRSIDISIMKGTFITSLYMLFWSSCLLIAFPWTVNNCYIFFRGFGFYILFAVICYVALAKLLMVYLEWIVDGIYAIGALRVSYYLSTGNQKRGLLLMLVFFALGLCLRLSCVSLECYKGGYGIFVQIGLLTVLNTLKWVSCMIYFSDCKERKMEKKVDEESGKDLAK*