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Report for Sequence Feature Glyma05g31050

Feature Type:gene_model
Chromosome:Gm05
Start:36271740
stop:36273372
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g31050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10310AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3241666-3242127 REVERSE LENGTH SoyBaseE_val: 8.00E-27ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7J3Q1UniRef Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7J3Q1_MEDTR SoyBaseE_val: 2.00E-33ISS
UniRef100_I1K4H9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4H9_SOYBN SoyBaseE_val: 4.00E-87ISS

Expression Patterns of Glyma05g31050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g31050
ParalogEvidenceComments
Glyma08g14260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g31050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g176700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g31050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g31050
>Glyma05g31050.1   sequence type=CDS   gene model=Glyma05g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTAATTCATATCATTACTATACAACCACCTCCTTGCTCATCATACTTCTTCTCCATGATTTGCTCTCTCTATCTCTAGTTTCTGCCTCCAATCATCCTCAATCTGCAATTTCTCCAAGGGAACTGTTATTTGGGGAGAAAAACAGGCTAGGTTCAATTCCTCCCAGCTGTCACAACAAGTGCAATGATTGTCATCCATGCATGGCAGTTCAAGTGCCAACTTTGCTAAGTCATGACTCCAATCCTCCAGATCTTACCAAAACTGCTGCGATGGCAAGTTTTCTTAACCCTTCTTCTCCCCAAGGCAACAGGTACTCCAATTACAAGCCATTGGGGTGGAAATGCCATTGTGGTGACCACTTCTTCAACCCTTAG
Predicted protein sequences of Glyma05g31050
>Glyma05g31050.1   sequence type=predicted peptide   gene model=Glyma05g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLNSYHYYTTTSLLIILLLHDLLSLSLVSASNHPQSAISPRELLFGEKNRLGSIPPSCHNKCNDCHPCMAVQVPTLLSHDSNPPDLTKTAAMASFLNPSSPQGNRYSNYKPLGWKCHCGDHFFNP*






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