Report for Sequence Feature Glyma05g31020
Feature Type: gene_model
Chromosome: Gm05
Start: 36252290
stop: 36255755
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g31020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G65270 AT
Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226
SoyBase E_val: 2.00E-138 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0087
KOG
GTPase Rab11/YPT3, small G protein superfamily
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF213 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00071 PFAM
Ras family
JGI ISS
UniRef100_I1K4H5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K4H5_SOYBN
SoyBase E_val: 7.00E-169 ISS
UniRef100_Q08147 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein n=2 Tax=Papilionoideae RepID=Q08147_PEA
SoyBase E_val: 1.00E-152 ISS
Expression Patterns of Glyma05g31020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g31020
Paralog Evidence Comments
Glyma08g14230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g31020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g176300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g31020
Transcripts of Glyma05g31020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31020.2 sequence type=transcript gene model=Glyma05g31020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGTACAACAAGCCTCAGTTCAAAACCGTTGCCTATCTTGAGATTTAGAGCACGCAGACAGAAGTCAGAACAAGCTGCGATGGACTATCCGTGAAATTGGCTGCATGGGCAATCTATGCAAATGGTTCATACTTGAAGAGTGCTTTGGATACAGAGCAGTTACGAGTGCATATTACAGGGGTGCTGTGGGGGCAATGTTGGTTTATGACATCACTAAACGCCAAACCTTTGATCACATACCACGTTGGTTAGAAGAACTGCGCAACCATGCTGACAAGAACATAGTCATCATTCTTACAGGCAACAAATGTGATCTTGAGAACCAGCGTGACGTACCCACTGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGGTTGTTTTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCCTTCATAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAACCTAACTGCTGATGAAAATCAGGGAAATGGGAACTCAGCATCTTTGTCTGGCCAGAAGATTATCGTTCCAGGCCCTGCACAGGAAATCCCTGCTAAGAGGAATATGTGCTGTCAATCATCTTGACTTTATTTATAATTTGTTTCTATTTAGTGTATTTCATGGTTGTGTTCTTATTACCAAATTTTAAAGGTTTGGCGCATTGCTTTTTTTGTACATTTAAATTTAATTTGATTTGGTTGGCGAGTTAAACATTAAAAATGAAGGTAGATACAAATTGCTTTTTTTTTCTTCTTTGAACAATTGCTTGGTTCAATATACATGAATTTTGTAGGTGAAATGGGTGGACTTGGAACTAATCGAATGTGAAAATATCATCATTCGTGCTTATAGTTCGAACATTGCTGTATTTTTCCAATGGGGTCATCTGGTAAGCCCATCCAATCTTAG
Coding sequences of Glyma05g31020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g31020.1 sequence type=CDS gene model=Glyma05g31020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGGTGCGGGTGCAGGAGGAGGGTATGGGGACGCGAACCAGAGGATAGACTACGTGTTCAAGGTGGTGCTGATAGGGGACTCGGCGGTGGGGAAGTCGCAGATACTAGCTCGGTTTGCGAGGAACGAGTTCAGCTTGGACTCCAAGTCCACCATCGGTGTTGAATTTCAGACGAGGACTTTGGTTATCGATCACAAGACCGTTAAGGCTCAGATCTGGGACACTGCCGGCCAAGAACGATACAGAGCAGTTACGAGTGCATATTACAGGGGTGCTGTGGGGGCAATGTTGGTTTATGACATCACTAAACGCCAAACCTTTGATCACATACCACGTTGGTTAGAAGAACTGCGCAACCATGCTGACAAGAACATAGTCATCATTCTTACAGGCAACAAATGTGATCTTGAGAACCAGCGTGACGTACCCACTGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGGTTGTTTTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCCTTCATAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAACCTAACTGCTGATGAAAATCAGGGAAATGGGAACTCAGCATCTTTGTCTGGCCAGAAGATTATCGTTCCAGGCCCTGCACAGGAAATCCCTGCTAAGAGGAATATGTGCTGTCAATCATCTTGA
>Glyma05g31020.2 sequence type=CDS gene model=Glyma05g31020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCAATCTATGCAAATGGTTCATACTTGAAGAGTGCTTTGGATACAGAGCAGTTACGAGTGCATATTACAGGGGTGCTGTGGGGGCAATGTTGGTTTATGACATCACTAAACGCCAAACCTTTGATCACATACCACGTTGGTTAGAAGAACTGCGCAACCATGCTGACAAGAACATAGTCATCATTCTTACAGGCAACAAATGTGATCTTGAGAACCAGCGTGACGTACCCACTGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGGTTGTTTTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCCTTCATAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAACCTAACTGCTGATGAAAATCAGGGAAATGGGAACTCAGCATCTTTGTCTGGCCAGAAGATTATCGTTCCAGGCCCTGCACAGGAAATCCCTGCTAAGAGGAATATGTGCTGTCAATCATCTTGA
Predicted protein sequences of Glyma05g31020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g31020.1 sequence type=predicted peptide gene model=Glyma05g31020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGAGAGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILTGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTADENQGNGNSASLSGQKIIVPGPAQEIPAKRNMCCQSS*
>Glyma05g31020.2 sequence type=predicted peptide gene model=Glyma05g31020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGNLCKWFILEECFGYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILTGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTADENQGNGNSASLSGQKIIVPGPAQEIPAKRNMCCQSS*