Glyma05g30980 - SoyBase

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Report for Sequence Feature Glyma05g30980

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36216364
stop:	36222498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g30980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G40050	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3550/UPF0682) \| chr4:18561206-18563727 REVERSE LENGTH=599	SoyBase	E_val: 0	ISS
GO:0038032	GO-bp	Annotation by Michelle Graham. GO Biological Process: termination of G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR21243	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21243:SF12	Panther		JGI		ISS
PF12070	PFAM	Protein of unknown function (DUF3550/UPF0682)	JGI		ISS
UniRef100_B9T094	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal transducer, putative n=1 Tax=Ricinus communis RepID=B9T094_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K4H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4H1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g30980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30980

Paralog	Evidence	Comments
Glyma08g14190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g175900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g30980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g30980

Limit To All Plant Sequences

>Glyma05g30980.2   sequence type=transcript   gene model=Glyma05g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAATTATGATATAGTAAAAGAAAATTATAATATAATTATATTATATACTTTTCTTACACAGTGTTTGACAAACAAAAATTGTAACCGCCCTCTCCAGTCTTCACCGTTCCTCTCTTTTTCCGACGCGCACACACAAATTTCGTTTCTATTTTCCGACTACCACTCTCTTTCTCCAATTCTCCGATGACCGGCGGCGACGAGCGTCACTGGACGGAGACCTAAAAACATCTCTCTCTCCCTCCCTCTCACACACTCATTCTTCGGCAGGCATGTCCGAGGACGCGAACCTGGCTCTGCAGACGTTCCGCGCGCTGGTGGAGAGCGCTGACCGGAAGTTCGGCCGGGTGCGCGACGTGCCGGCCTACGGCGGCGGCGCGAGCCAGCAGCAGCAGCAGCATCACGCGTTCCAGAAGGTGTTCAAGGCCTACACGCGGCTGTGGAAGTACCAGCAGGAGAACCGTGCGAAGCTGGTGGAGTGCGGCATGAAGCGGTGGGAAATCGGCGAGATCGCGAGCCGAATCGGACAGCTGTACTTCGGGCAGTACATGAGGAGCAGCGAGTGCAGGTTCCTCGTCGAGGCCTACGTCTTCTACGAGGCCATACTCAGCAGAAGATACTTCCAGGGATCCGAACCCAACGCCAAAGATCTCGGAGTTCGCTCGAAGGAGTTGAGGTTCTACGCGCGCTTTTTGCTCGTTTCGGTTATTCTCAACCGCACCGAGATGGTTAAGCATCTCGTCGAACGCTTTGGGGCTTTGGTTGAGGATTGCAGGACTACCTTTCGGGAAACTAACTTTAAGGAATGGAGGCAAGTGGTGACAGAAATTAACCGTTTCACGAAAGTTGACAAGGGCTTTAGTTTCAGGCCCATGCGTTATTGTGCCACATTTGATACTCATCGAGCTTCTCTTCCTTATGTGGCTCGTTTTCATGCAAAGAGGGTTTTGAAATTTCAAGATGCACTGTTGACAAGCTATCATCGAAATGAGGTCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGGAGTATTCTACCAAAAACATACAGTTAAACCTAAGGAGAATGGTGACATAATTGATCATTCAGGAGCTTCCGGGATAATAGACATGAATCTTACTGCAGATATGACCGATCCAACTGTACCTCCTAATCCTAGAAAGGCTTCCCTGTACCGTCCATCTGTGACACATGTGATAGCAGTTTTGGCTACTATTTGTGAGGAGCTGCCACCAGACTGTGTTGTGCTAGTATATCTTTCAGCCTCAGGGAAGGCTGGTCTTAATAATGTCTCTCAGGTGGAGAATTTTAGCGGTTCATCCAAATATTCAAGACACAAAGTCCTCTCTCAGACTTCCCAAGGACAGAATTCTGAACCTTCCGAAACTCAAAATAATGGCAAGAGAGAACTGAGCTATTATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATAGTGGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGGTTTGTCAAAACTCAGAACTTGTGTATAAGTTGCCTGTGAACTTTGTTAGGCGGAGCTGTTCAGGATATTTATTCCTTGAATCTAATTTTACTTGTTAA

Coding sequences of Glyma05g30980

Limit To All Plant Sequences

>Glyma05g30980.1   sequence type=CDS   gene model=Glyma05g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGAGGACGCGAACCTGGCTCTGCAGACGTTCCGCGCGCTGGTGGAGAGCGCTGACCGGAAGTTCGGCCGGGTGCGCGACGTGCCGGCCTACGGCGGCGGCGCGAGCCAGCAGCAGCAGCAGCATCACGCGTTCCAGAAGGTGTTCAAGGCCTACACGCGGCTGTGGAAGTACCAGCAGGAGAACCGTGCGAAGCTGGTGGAGTGCGGCATGAAGCGGTGGGAAATCGGCGAGATCGCGAGCCGAATCGGACAGCTGTACTTCGGGCAGTACATGAGGAGCAGCGAGTGCAGGTTCCTCGTCGAGGCCTACGTCTTCTACGAGGCCATACTCAGCAGAAGATACTTCCAGGGATCCGAACCCAACGCCAAAGATCTCGGAGTTCGCTCGAAGGAGTTGAGGTTCTACGCGCGCTTTTTGCTCGTTTCGGTTATTCTCAACCGCACCGAGATGGTTAAGCATCTCGTCGAACGCTTTGGGGCTTTGGTTGAGGATTGCAGGACTACCTTTCGGGAAACTAACTTTAAGGAATGGAGGCAAGTGGTGACAGAAATTAACCGTTTCACGAAAGTTGACAAGGGCTTTAGTTTCAGGCCCATGCGTTATTGTGCCACATTTGATACTCATCGAGCTTCTCTTCCTTATGTGGCTCGTTTTCATGCAAAGAGGGTTTTGAAATTTCAAGATGCACTGTTGACAAGCTATCATCGAAATGAGGTCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGGAGTATTCTACCAAAAACATACAGTTAAACCTAAGGAGAATGGTGACATAATTGATCATTCAGGAGCTTCCGGGATAATAGACATGAATCTTACTGCAGATATGACCGATCCAACTGTACCTCCTAATCCTAGAAAGGCTTCCCTGTACCGTCCATCTGTGACACATGTGATAGCAGTTTTGGCTACTATTTGTGAGGAGCTGCCACCAGACTGTGTTGTGCTAGTATATCTTTCAGCCTCAGGGAAGGCTGGTCTTAATAATGTCTCTCAGGTGGAGAATTTTAGCGGTTCATCCAAATATTCAAGACACAAAGTCCTCTCTCAGACTTCCCAAGGACAGAATTCTGAACCTTCCGAAACTCAAAATAATGGCAAGAGAGAACTGAGCTATTATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATAGTGGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGGTTTTACATGGGGCTGAAAGGGGTGAAACGGCTGCTCTATTTCTTTCACCTTTAAGACCGATTTTCAAGAATCCCTCTGATGTAAATTCAAATAATGGAAGCCAATTTACCTTTTTTTTGACTGCTCCTTTGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAGTGAACTGTACCTGCCACTTTGTTTACCCCATCTACCGTCTTCTGTTGCACCAACGTCTGAAGCTGTGCGTTCTGCTGTTGTGCAACTTGCCATGCACTTTGACGTTGCTGACTCCTTTCACTTTACTGAAACATAA

>Glyma05g30980.2   sequence type=CDS   gene model=Glyma05g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGAGGACGCGAACCTGGCTCTGCAGACGTTCCGCGCGCTGGTGGAGAGCGCTGACCGGAAGTTCGGCCGGGTGCGCGACGTGCCGGCCTACGGCGGCGGCGCGAGCCAGCAGCAGCAGCAGCATCACGCGTTCCAGAAGGTGTTCAAGGCCTACACGCGGCTGTGGAAGTACCAGCAGGAGAACCGTGCGAAGCTGGTGGAGTGCGGCATGAAGCGGTGGGAAATCGGCGAGATCGCGAGCCGAATCGGACAGCTGTACTTCGGGCAGTACATGAGGAGCAGCGAGTGCAGGTTCCTCGTCGAGGCCTACGTCTTCTACGAGGCCATACTCAGCAGAAGATACTTCCAGGGATCCGAACCCAACGCCAAAGATCTCGGAGTTCGCTCGAAGGAGTTGAGGTTCTACGCGCGCTTTTTGCTCGTTTCGGTTATTCTCAACCGCACCGAGATGGTTAAGCATCTCGTCGAACGCTTTGGGGCTTTGGTTGAGGATTGCAGGACTACCTTTCGGGAAACTAACTTTAAGGAATGGAGGCAAGTGGTGACAGAAATTAACCGTTTCACGAAAGTTGACAAGGGCTTTAGTTTCAGGCCCATGCGTTATTGTGCCACATTTGATACTCATCGAGCTTCTCTTCCTTATGTGGCTCGTTTTCATGCAAAGAGGGTTTTGAAATTTCAAGATGCACTGTTGACAAGCTATCATCGAAATGAGGTCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGGAGTATTCTACCAAAAACATACAGTTAAACCTAAGGAGAATGGTGACATAATTGATCATTCAGGAGCTTCCGGGATAATAGACATGAATCTTACTGCAGATATGACCGATCCAACTGTACCTCCTAATCCTAGAAAGGCTTCCCTGTACCGTCCATCTGTGACACATGTGATAGCAGTTTTGGCTACTATTTGTGAGGAGCTGCCACCAGACTGTGTTGTGCTAGTATATCTTTCAGCCTCAGGGAAGGCTGGTCTTAATAATGTCTCTCAGGTGGAGAATTTTAGCGGTTCATCCAAATATTCAAGACACAAAGTCCTCTCTCAGACTTCCCAAGGACAGAATTCTGAACCTTCCGAAACTCAAAATAATGGCAAGAGAGAACTGAGCTATTATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATAGTGGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGGTTTGTCAAAACTCAGAACTTGTGTATAA

Predicted protein sequences of Glyma05g30980

Limit To All Plant Sequences

>Glyma05g30980.1   sequence type=predicted peptide   gene model=Glyma05g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEDANLALQTFRALVESADRKFGRVRDVPAYGGGASQQQQQHHAFQKVFKAYTRLWKYQQENRAKLVECGMKRWEIGEIASRIGQLYFGQYMRSSECRFLVEAYVFYEAILSRRYFQGSEPNAKDLGVRSKELRFYARFLLVSVILNRTEMVKHLVERFGALVEDCRTTFRETNFKEWRQVVTEINRFTKVDKGFSFRPMRYCATFDTHRASLPYVARFHAKRVLKFQDALLTSYHRNEVKFAELTLDIYRMIQCLEWEPSGVFYQKHTVKPKENGDIIDHSGASGIIDMNLTADMTDPTVPPNPRKASLYRPSVTHVIAVLATICEELPPDCVVLVYLSASGKAGLNNVSQVENFSGSSKYSRHKVLSQTSQGQNSEPSETQNNGKRELSYYDNYLWFGPKGNSGSNNLYPGDLIPFTRKPLFLIIDSDNSHAFKVLHGAERGETAALFLSPLRPIFKNPSDVNSNNGSQFTFFLTAPLSAFCQMIGLSPNESDTDVYNEAENIIANALTEWEIILCSSTTMDLVWAQVISDPFLRRLILRFIFCRSVISFFCPPEESELYLPLCLPHLPSSVAPTSEAVRSAVVQLAMHFDVADSFHFTET*

>Glyma05g30980.2   sequence type=predicted peptide   gene model=Glyma05g30980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEDANLALQTFRALVESADRKFGRVRDVPAYGGGASQQQQQHHAFQKVFKAYTRLWKYQQENRAKLVECGMKRWEIGEIASRIGQLYFGQYMRSSECRFLVEAYVFYEAILSRRYFQGSEPNAKDLGVRSKELRFYARFLLVSVILNRTEMVKHLVERFGALVEDCRTTFRETNFKEWRQVVTEINRFTKVDKGFSFRPMRYCATFDTHRASLPYVARFHAKRVLKFQDALLTSYHRNEVKFAELTLDIYRMIQCLEWEPSGVFYQKHTVKPKENGDIIDHSGASGIIDMNLTADMTDPTVPPNPRKASLYRPSVTHVIAVLATICEELPPDCVVLVYLSASGKAGLNNVSQVENFSGSSKYSRHKVLSQTSQGQNSEPSETQNNGKRELSYYDNYLWFGPKGNSGSNNLYPGDLIPFTRKPLFLIIDSDNSHAFKAGLSKLRTCV*

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