Glyma05g30970 - SoyBase

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Report for Sequence Feature Glyma05g30970

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36202594
stop:	36205215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g30970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65290	AT	Annotation by Michelle Graham. TAIR10: LMBR1-like membrane protein \| chr5:26089814-26094337 FORWARD LENGTH=733	SoyBase	E_val: 7.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21355	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_G7J381	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LMBR1 domain-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7J381_MEDTR	SoyBase	E_val: 3.00E-117	ISS
UniRef100_I1K4H0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K4H0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g30970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30970

Paralog	Evidence	Comments
Glyma08g14170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g30970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g30970

Limit To All Plant Sequences

>Glyma05g30970.1   sequence type=CDS   gene model=Glyma05g30970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCCTGCTGCATTTAGTGTTGCATCATTTAGTCATGACATCACGTACTCCTTTTATGAGGAGATATTAGAATTTTTCTGGCGATGCATTTTAAGAAAGCAAGTTCAGAAAGGCTTGGCTGTTATACTTGGTGTCATTTTGATTGCTCGATATGCTCCCCCCATCTCATTCAACTTTTTCAATCTCATTCGCCTTGGTTCTGATAAAACAACTATATTTGAACAGCAAATGGGGAACATTGATAATGCTGTCCCTTTCTTTGGAGATAAGTTTAACAGAATCTATCCACTTATTATGGTTATATACACCCTTTTGGTTGCAAGCAATTTCTTTGATAGGGTATTTGATTCTCTTGGGAGCTGGAAGAGATATGTTTTCGAAACTGAAGCTGAAGATATGGGTGGTTTTGATCCATCAGGATTAATTATCTTGCAGAAAGAAAGATATTGGCTTGAGCAAGGACGCAATGTAGGCGAGCAAGTTGTTCCACCAGTGAGGAATTTTAATGGAATTGATGTTGAATCTAGTGACAATATTATGTTCAAACAGTTCACTCACTTTATAGCTGATATGGTTCAGGTGAAGAATGGTGTTGAAATGAAGGGAAATTCTTCTTTAGTTAATAAAGAAATAGATGGAAATCTGCCTAAAACTTTGAAGGAAGAGACAAGGAGATATAGCTCGAGCAGGGAAGCCATCAGCAGCAGACCAGAAGAGAAAAACTTAACATCTTCTAGGGTTTCCCTGCCTGATCACAGCAATACTCATTCTAGTAATGCTTCTGGAACTTCAGGCTTGGCTTCAACATGGCAAACAATGAAAACAGGTTTTCAAAGTTTTGGGGCTAACTTAGGGGGCAAAGAATTTTTACCCATACGGCAAACACAGGAAGCTAAGATGTCTCGTGTGTCCTCATCTGAGTCCCTTGATGATATATTTCAAAGACTGAAACGGCCTGCATTGGACCAAAATATTCACAATGAAAATGATTATTTGAGGGGGGGCAATATTTCTGGTCCTTCTAGATGA

Predicted protein sequences of Glyma05g30970

Limit To All Plant Sequences

>Glyma05g30970.1   sequence type=predicted peptide   gene model=Glyma05g30970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FPAAFSVASFSHDITYSFYEEILEFFWRCILRKQVQKGLAVILGVILIARYAPPISFNFFNLIRLGSDKTTIFEQQMGNIDNAVPFFGDKFNRIYPLIMVIYTLLVASNFFDRVFDSLGSWKRYVFETEAEDMGGFDPSGLIILQKERYWLEQGRNVGEQVVPPVRNFNGIDVESSDNIMFKQFTHFIADMVQVKNGVEMKGNSSLVNKEIDGNLPKTLKEETRRYSSSREAISSRPEEKNLTSSRVSLPDHSNTHSSNASGTSGLASTWQTMKTGFQSFGANLGGKEFLPIRQTQEAKMSRVSSSESLDDIFQRLKRPALDQNIHNENDYLRGGNISGPSR*

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