SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G40060 | AT | Annotation by Michelle Graham. TAIR10: homeobox protein 16 | chr4:18571682-18572774 REVERSE LENGTH=294 | SoyBase | E_val: 2.00E-78 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0030308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell growth | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0483 | KOG | Transcription factor HEX, contains HOX and HALZ domains | JGI | ISS | |
| PTHR24326 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24326:SF221 | Panther | JGI | ISS | ||
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| PF02183 | PFAM | Homeobox associated leucine zipper | JGI | ISS | |
| UniRef100_I1K4G7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K4G7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93XA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain leucine zipper protein HDZ1 (Fragment) n=1 Tax=Phaseolus vulgaris RepID=Q93XA5_PHAVU | SoyBase | E_val: 3.00E-125 | ISS |
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Glyma05g30940 not represented in the dataset |
Glyma05g30940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g14130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g175600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30940.1 sequence type=CDS gene model=Glyma05g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGACTTGGCAGTTCGGATACACTGGGTGCTCTCATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGGAAGGAGTTCCAGTCCATGCTGGAAGGACTCGACGAAGAAGGGTGCGTGGAAGAAGCAGGGCACCACTCTGAGAAGAAACGACGACTAAACGTAGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAAGTAGAGAACAAACTGGAACCTGACCGAAAGGTGAAGCTCGCGCAAGAACTCGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGCCGTGCCAGATGGAAAACAAAGCAATTGGAAAGAGATTACGGCGTCCTCAAAGCCAATTACGGATCACTTAAACTTAACTTTGACACCCTCCAACAAGACAACGAAGCCTTACTCAAACAGATAAAGGAATTGAAATCGAGGCTGGTGCAAGAAGAGAACAACAACAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAGCCACTCTGCAGGATAGTAACCCGCTCTGTGAATCCGCCATTCCTGGATCGGACTCGAAGGAGTTGAGTTACGAGTGTTTCAACAAGAGTGATGAGGTGGGAGGGGGTTCTGTGTTCCCTGTGGATTTCAAAGATGGGTCTTCTGATAGCGACTCAAGTGCGATCTTGAACGAGGAGAACAACAACCACAGCCCCAACAACAACGCGGCGATTTCGTCGTGTGGGGTTCTGCAAAGTCACGGGCTTTTGTCGTCGCCTTCTTCTTCGTCGATGAACAACTGTTTCCAGTTCCAGAAACAGTACCAGACGACGACGCAGTACGTGAAGATGGAGGAGCACAATTTTCTCAGCGCCGACGAGGCCTGCAATTTCTTCTCGGACGAACAAGCACCAACTCTGCAGTGTCAATTTTCGTTAAGTGATGACGTGGTAGACGAAGTGTCACGTCATCGCGCCCAATCAATGGTATATCAGTGTCACATTATTGAAGGAAGTGATGTAATAATGATGTGTCAGTGA
>Glyma05g30940.1 sequence type=predicted peptide gene model=Glyma05g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRLGSSDTLGALMTICPPTDEHSPRNNHVYGKEFQSMLEGLDEEGCVEEAGHHSEKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYGSLKLNFDTLQQDNEALLKQIKELKSRLVQEENNNNTESDVSVKEEMIATLQDSNPLCESAIPGSDSKELSYECFNKSDEVGGGSVFPVDFKDGSSDSDSSAILNEENNNHSPNNNAAISSCGVLQSHGLLSSPSSSSMNNCFQFQKQYQTTTQYVKMEEHNFLSADEACNFFSDEQAPTLQCQFSLSDDVVDEVSRHRAQSMVYQCHIIEGSDVIMMCQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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