SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10380 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:3267819-3268724 FORWARD LENGTH=301 | SoyBase | E_val: 1.00E-40 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002238 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0012501 | GO-bp | Annotation by Michelle Graham. GO Biological Process: programmed cell death | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0043068 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0051865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1493 | KOG | Anaphase-promoting complex (APC), subunit 11 | JGI | ISS | |
| PTHR22765 | Panther | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | JGI | ISS | |
| PTHR22765:SF25 | Panther | JGI | ISS | ||
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_B9T780 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T780_RICCO | SoyBase | E_val: 2.00E-54 | ISS |
| UniRef100_I1K4G5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4G5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g30920 not represented in the dataset |
Glyma05g30920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g175400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30920.1 sequence type=CDS gene model=Glyma05g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCTCATCTTCCTAAGAATGGAACCCAACAACACCATGGTACCCCAACACCTTCCCCAGCTTCAGTTGCAAATAATATTATAATACCACATCCTGAATTCCGGATACCTTCCTTTAAAGAACATCACAAAAATGTTCCTCAACTCGCGATGATTGTCATGGCATGCATGGTTGGCGTCATCATGTTTCTCTGCGCCGTGTCCGTACTCATAAGGTACTTCTACTCAAGAAGATATAGCCGCAATAACCAAAACAGAAGAGTCGACGCCCCCATATTGTTCGATTTGAACGGAGATTCTCCTCCGAGTTCGGATAACGATGATGACGTGGAGGAGTTGGCGGTTGTCCACCCGATATGGTACATCCGTACGGTGGGTCTCCAACAGTCCCTCATAGACTCCATCACGGTATTCAAATACAAGAAAGGCGAAGGCATCATAGACGGCACCGAGTGTTCGGTTTGCCTCGGAGAGTTCGAACACGACGAGAGTCTGAGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACATCCCTTGCATTGACACGTGGCTCAGGTCTCACAAAAATTGCCCCTTGTGTCGTGCACCTGTGCTACGCGACGAAACTGACGGCGCGCATGTGATCAGAGCCGTTGATCAGAGTAATCAGACGGTTTCAAACGTTTCTGGTCATCAAGAGGCCCGCGTGGAGAGTTCTGATCATGAGAGGGTTGAAGATGATGATGTGTCTTCGGCCGCAGTGGAAGTGGTAGAGGCAACACAGCCTCTGAGAAGATCGGTTTCGATGGATTCTTCTTCTGCTAATTCAATGGTGTTATTTGGTGATGTGGTGGTGGATTTAGATACCCATCATTGTGGTGAAAAAGTGAATTATTCAAGTAATAAGGATATGAGTGTTGTTGTTAATGAGAAGCATGGTAGTGGGAGCTCAACTTCAACAACTATTATTAATAACAAGTTGGCTTCAATTGGACGTGCGTTGCAAAAGAGGCCGATCTCCGTCTCAATGAGAATGAGAAGATCTTTTTCACATAACACCAAGTTTTTGTTCTCCAGACACTGTAGGAGTCAGAGTTCAACTCTTCCATTGTAA
>Glyma05g30920.1 sequence type=predicted peptide gene model=Glyma05g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPHLPKNGTQQHHGTPTPSPASVANNIIIPHPEFRIPSFKEHHKNVPQLAMIVMACMVGVIMFLCAVSVLIRYFYSRRYSRNNQNRRVDAPILFDLNGDSPPSSDNDDDVEELAVVHPIWYIRTVGLQQSLIDSITVFKYKKGEGIIDGTECSVCLGEFEHDESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLRDETDGAHVIRAVDQSNQTVSNVSGHQEARVESSDHERVEDDDVSSAAVEVVEATQPLRRSVSMDSSSANSMVLFGDVVVDLDTHHCGEKVNYSSNKDMSVVVNEKHGSGSSTSTTIINNKLASIGRALQKRPISVSMRMRRSFSHNTKFLFSRHCRSQSSTLPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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