SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12990 | AT | Annotation by Michelle Graham. TAIR10: beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003830 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | SoyBase | N/A | ISS |
| GO:0008375 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12224 | Panther | BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE | JGI | ISS | |
| PF04724 | PFAM | Glycosyltransferase family 17 | JGI | ISS | |
| UniRef100_G7JBJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase n=1 Tax=Medicago truncatula RepID=G7JBJ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K4G0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K4G0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g30870 not represented in the dataset |
Glyma05g30870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g14070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g175000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30870.2 sequence type=transcript gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGGATTCGTTTGGGAGGGAAAGGAGTCTCGTTTATGTTGTAGCCATAATTGGATTTGAATGGATGCAAGGTTTCTCGCATGAAGAGCTTGCAATTTGGGGTTTTTTCGGGGCATGGTTTCTTTTTTCTTCATGATACAGCTTTTGGCTTTATGATTAAATTGGGGATTTAAGTTATATGATGCTTGAAAATTTTCCCCAATACAGAGAGAGGAGCATTGGGTTTTTGATAAGATTGTGTATGATTTAAAGAAGCTGCATTGGATATTTATTTCATGATTTTTCATTCTTGAAGCTGGATTTTTACAGTTTAGTTATATGTCTGTTCCTTAATTTTGCAGGAATCAAGTCAAGTATCAGGTATGTCACGAATTCGCTGCATTCTGCGGGGTTTGGATGTGAAAACCTACATATTCATGTTTGCTGTTATCCCAATGTGTGTCTTTGGATTCTATATACATGGGCAGAAGATCTCCTACTTTCTGCGGCCACTATGGGAAAAAGCACCCAAGCCTTTCAATGTCATCCCTCATTACTATAACGAAAATGTCACCATGGAGAATCTCTGCAGGCTTCATGGATGGGGAGTCCGGGAGTACCCTCGACGTGTTTATGATGCTGTGTTGTTTAGTAATGAGCTGGAAATACTAACCTTGCGCTGGAAAGAATTGTACCCTTACATAACTGAATTTGTTGTCCTTGAGTCAAATTCTACCTTCACCGGATTGCCTAAGGCTCTGGTTTTCAATAGCAATAGGGAGCAGTTCAAATTTGTTGAGCCGCGGTTAACTTATGGGACCATTGGTGGGAGATTTAAGAAAGGAGAAAACCCATTTGTTGAAGAGGCGTATCAGCGTGTAGCATTGGACCAGCTCCTGAAGATAGCTGGTATTACTGATGATGACTTGTTGATTATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATTAACCTCCTGAGGTGGTGTGATGAAGTACCCTCAATCCTTCATCTGCAGCTGAAAAATTATCTCTATTCATTTGAATTTCGTGTGGATGATAAGAGCTGGAGGGCTTCAATTCACAGGTATGAGACTGGGAAGACGAGGTATGCACATTATCGCCAGTCTGATGACATATTGGCAGATGCTGGATGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTCATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTCAGGTTCTCTCACTATTTAAATCCTGAAAGAATTCAGAAGGTAATCTGCAAAGGGACCGATTTATTTGATATGCTGCCGGAGGAGTACACTTTCAGGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTTCTTCTGGAAAATTCTGACAAGTATAAATTTCTTTTACCTGGAAATTGCAAGAGAGAGAGATGATCTTGGAAAGTCATTTATGATACTGGCTTGTTTCTGAGCTTCTAGCTTGTACAGCTCAAGTGACTCTCCTCTCTCGGAGGTTTTTAACTGAGGTTGTGATGATTGTATGTCACTCGTATAGCTGTAAGCTGTGTCATTGTCCAGTGAGATATTCTTTGGGAATTAATTAATTTCAGATAAATTCTTTGATCTTGGGGGAATTCTGTATATAATTTAGAGCTGGACTTTCATTCAAGGGGAGCAACATCTCTACTGATGAGGACTGAAACTGCTGTTTTGAGAACGGGCTTGCCTTCATGAAATGTGTTTATTTAGTATTAGGGTGATTGATCCCCGGATATACGAGACTAGTTTAAAATTCCCCACTTTTTCCTGTTTGGGAAGTTTTGTTCTGCAGACCAATTTATTTTCTAATTATTCTTTATTTATGCAAATATCTAATCCGATTGGTTGGTCTATATTCATAACAGTGCTGA >Glyma05g30870.3 sequence type=transcript gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCGAACCAGTTGTCGCGAGCGAGTCAATACTCAATACGCACAACAACGCGTGGAGAAGAGAGACTCAGTAAAAGTAAAGGCCAAGACTTTATTTATAAGCAAAAGCGGGACAGAGAATATAAAGAAAGAAATTAGCAGAGAGAAAGTGGAATCCCCAATCTTGTAACGGAACTTTTTTTCTTATCAGTTCCATAGCTAGCTGTGTGGAGACGACAACTGCCACCCATTCCAACATACAGAGAGGCTATTTACTAATTACTGTTCCTCGTGTGAACAAACATATAAACCACCTCGGATTTTGCTTCCTCTGCTGTGTTTTAACGACAACGCGTTTCTTTGCTTATACACTAAGATTTCAAACGGCGATTCGTTTTGCGACTGTGTGGTCGCGATCTGGTTTTGTTTTGATTCATTTGTACGTTGGACTGTGAAACACACGCCGAAATGTGGTGGATGATGGGCGAGACTGGAGGCAATTACTGTTGTAAGAAGAGCGATGATTTGTGCACCAATGTTTGTGGTCAGGTATATCATCCATAATTTTTTTTTTTATTAAATGTTACTTTTCCGTTTATGTGGTGTCGATGTAAGTTAATCTTTCAGCTGTGGCTTCGGTTCGCCTATTTAATTTGTGGATTTCGTTATTTTGGAGAGAAAACAAAAAAAAAGTCATTTTGAATGGTTTTTCCATAGAAAACTGTTTATGTGGTTTGTCATGTAATCTATCACTGGATTGTGATGAAACTTTTGTCCTAGATTTGCTCTTTTTAGGTGTTGTTTGTTTGCTATTTCTTTTAAAAAAAAAAAAAAATTGGTGTGTGAACGAGATTTTCGTGATCTGAATTTAGATATGGGATAAGGTTGTGTTTTTTGTTATTTTTTTATTTTTATTTTTCTAATTTTAGGAAACCTGCCGAGGTATTTTTTGTGGCTTGTAAGTGAACGCAAACGAAGACACCCTTTTTTTTCCTTCTTGTTCCTATTTTTTGGGGGATTCGTTTGGGAGGGAAAGGAGTCTCGTTTATGTTGTAGCCATAATTGGATTTGAATGGATGCAAGGTTTCTCGCATGAAGAGCTTGCAATTTGGGGTTTTTTCGGGGCATGGTTTCTTTTTTCTTCATGATACAGCTTTTGGCTTTATGATTAAATTGGGGATTTAAGTTATATGATGCTTGAAAATTTTCCCCAATACAGAGAGAGGAGCATTGGGTTTTTGATAAGATTGTGAATCAAGTCAAGTATCAGGTATGTCACGAATTCGCTGCATTCTGCGGGGTTTGGATGTGAAAACCTACATATTCATGTTTGCTGTTATCCCAATGTGTGTCTTTGGATTCTATATACATGGGCAGAAGATCTCCTACTTTCTGCGGCCACTATGGGAAAAAGCACCCAAGCCTTTCAATGTCATCCCTCATTACTATAACGAAAATGTCACCATGGAGAATCTCTGCAGGCTTCATGGATGGGGAGTCCGGGAGTACCCTCGACGTGTTTATGATGCTGTGTTGTTTAGTAATGAGCTGGAAATACTAACCTTGCGCTGGAAAGAATTGTACCCTTACATAACTGAATTTGTTGTCCTTGAGTCAAATTCTACCTTCACCGGATTGCCTAAGGCTCTGGTTTTCAATAGCAATAGGGAGCAGTTCAAATTTGTTGAGCCGCGGTTAACTTATGGGACCATTGGTGGGAGATTTAAGAAAGGAGAAAACCCATTTGTTGAAGAGGCGTATCAGCGTGTAGCATTGGACCAGCTCCTGAAGATAGCTGGTATTACTGATGATGACTTGTTGATTATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATTAACCTCCTGAGGTGGTGTGATGAAGTACCCTCAATCCTTCATCTGCAGCTGAAAAATTATCTCTATTCATTTGAATTTCGTGTGGATGATAAGAGCTGGAGGGCTTCAATTCACAGGTATGAGACTGGGAAGACGAGGTATGCACATTATCGCCAGTCTGATGACATATTGGCAGATGCTGGATGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTCATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTCAGGTTCTCTCACTATTTAAATCCTGAAAGAATTCAGAAGGTAATCTGCAAAGGGACCGATTTATTTGATATGCTGCCGGAGGAGTACACTTTCAGGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTTCTTCTGGAAAATTCTGACAAGTATAAATTTCTTTTACCTGGAAATTGCAAGAGAGAGAGATGATCTTGGAAAGTCATTTATGATACTGGCTTGTTTCTGAGCTTCTAGCTTGTACAGCTCAAGTGACTCTCCTCTCTCGGAGGTTTTTAACTGAGGTTGTGATGATTGTATGTCACTCGTATAGCTGTAAGCTGTGTCATTGTCCAGTGAGATATTCTTTGGGAATTAATTAATTTCAGATAAATTCTTTGATCTTGGGGGAATTCTGTATATAATTTAGAGCTGGACTTTCATTCAAGGGGAGCAACATCTCTACTGATGAGGACTGAAACTGCTGTTTTGAGAACGGGCTTGCCTTCATGAAATGTGTTTATTTAGTATTAGGGTGATTGATCCCCGGATATACGAGACTAGTTTAAAATTCCCCACTTTTTCCTGTTTGGGAAGTTTTGTTCTGCAGACCAATTTATTTTCTAATTATTCTTTATTTATGCAAATATCTAATCCGATTGGTTGGTCTATATTCATAACAGTGCTGACTCAGTTCTTTGCATTATATAAATATAGTTTGGTTGCTTTCAATTAGATGCCGTTCCAATATCTGA
>Glyma05g30870.1 sequence type=CDS gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGTGGATGATGGGCGAGACTGGAGGCAATTACTGTTGTAAGAAGAGCGATGATTTGTGCACCAATGTTTGTGGTCAGGAATCAAGTCAAGTATCAGGTATGTCACGAATTCGCTGCATTCTGCGGGGTTTGGATGTGAAAACCTACATATTCATGTTTGCTGTTATCCCAATGTGTGTCTTTGGATTCTATATACATGGGCAGAAGATCTCCTACTTTCTGCGGCCACTATGGGAAAAAGCACCCAAGCCTTTCAATGTCATCCCTCATTACTATAACGAAAATGTCACCATGGAGAATCTCTGCAGGCTTCATGGATGGGGAGTCCGGGAGTACCCTCGACGTGTTTATGATGCTGTGTTGTTTAGTAATGAGCTGGAAATACTAACCTTGCGCTGGAAAGAATTGTACCCTTACATAACTGAATTTGTTGTCCTTGAGTCAAATTCTACCTTCACCGGATTGCCTAAGGCTCTGGTTTTCAATAGCAATAGGGAGCAGTTCAAATTTGTTGAGCCGCGGTTAACTTATGGGACCATTGGTGGGAGATTTAAGAAAGGAGAAAACCCATTTGTTGAAGAGGCGTATCAGCGTGTAGCATTGGACCAGCTCCTGAAGATAGCTGGTATTACTGATGATGACTTGTTGATTATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATTAACCTCCTGAGGTGGTGTGATGAAGTACCCTCAATCCTTCATCTGCAGCTGAAAAATTATCTCTATTCATTTGAATTTCGTGTGGATGATAAGAGCTGGAGGGCTTCAATTCACAGGTATGAGACTGGGAAGACGAGGTATGCACATTATCGCCAGTCTGATGACATATTGGCAGATGCTGGATGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTCATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTCAGGTTCTCTCACTATTTAAATCCTGAAAGAATTCAGAAGGTAATCTGCAAAGGGACCGATTTATTTGATATGCTGCCGGAGGAGTACACTTTCAGGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTTCTTCTGGAAAATTCTGACAAGTATAAATTTCTTTTACCTGGAAATTGCAAGAGAGAGAGATGA >Glyma05g30870.2 sequence type=CDS gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCACGAATTCGCTGCATTCTGCGGGGTTTGGATGTGAAAACCTACATATTCATGTTTGCTGTTATCCCAATGTGTGTCTTTGGATTCTATATACATGGGCAGAAGATCTCCTACTTTCTGCGGCCACTATGGGAAAAAGCACCCAAGCCTTTCAATGTCATCCCTCATTACTATAACGAAAATGTCACCATGGAGAATCTCTGCAGGCTTCATGGATGGGGAGTCCGGGAGTACCCTCGACGTGTTTATGATGCTGTGTTGTTTAGTAATGAGCTGGAAATACTAACCTTGCGCTGGAAAGAATTGTACCCTTACATAACTGAATTTGTTGTCCTTGAGTCAAATTCTACCTTCACCGGATTGCCTAAGGCTCTGGTTTTCAATAGCAATAGGGAGCAGTTCAAATTTGTTGAGCCGCGGTTAACTTATGGGACCATTGGTGGGAGATTTAAGAAAGGAGAAAACCCATTTGTTGAAGAGGCGTATCAGCGTGTAGCATTGGACCAGCTCCTGAAGATAGCTGGTATTACTGATGATGACTTGTTGATTATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATTAACCTCCTGAGGTGGTGTGATGAAGTACCCTCAATCCTTCATCTGCAGCTGAAAAATTATCTCTATTCATTTGAATTTCGTGTGGATGATAAGAGCTGGAGGGCTTCAATTCACAGGTATGAGACTGGGAAGACGAGGTATGCACATTATCGCCAGTCTGATGACATATTGGCAGATGCTGGATGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTCATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTCAGGTTCTCTCACTATTTAAATCCTGAAAGAATTCAGAAGGTAATCTGCAAAGGGACCGATTTATTTGATATGCTGCCGGAGGAGTACACTTTCAGGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTTCTTCTGGAAAATTCTGACAAGTATAAATTTCTTTTACCTGGAAATTGCAAGAGAGAGAGATGA >Glyma05g30870.3 sequence type=CDS gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCACGAATTCGCTGCATTCTGCGGGGTTTGGATGTGAAAACCTACATATTCATGTTTGCTGTTATCCCAATGTGTGTCTTTGGATTCTATATACATGGGCAGAAGATCTCCTACTTTCTGCGGCCACTATGGGAAAAAGCACCCAAGCCTTTCAATGTCATCCCTCATTACTATAACGAAAATGTCACCATGGAGAATCTCTGCAGGCTTCATGGATGGGGAGTCCGGGAGTACCCTCGACGTGTTTATGATGCTGTGTTGTTTAGTAATGAGCTGGAAATACTAACCTTGCGCTGGAAAGAATTGTACCCTTACATAACTGAATTTGTTGTCCTTGAGTCAAATTCTACCTTCACCGGATTGCCTAAGGCTCTGGTTTTCAATAGCAATAGGGAGCAGTTCAAATTTGTTGAGCCGCGGTTAACTTATGGGACCATTGGTGGGAGATTTAAGAAAGGAGAAAACCCATTTGTTGAAGAGGCGTATCAGCGTGTAGCATTGGACCAGCTCCTGAAGATAGCTGGTATTACTGATGATGACTTGTTGATTATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATTAACCTCCTGAGGTGGTGTGATGAAGTACCCTCAATCCTTCATCTGCAGCTGAAAAATTATCTCTATTCATTTGAATTTCGTGTGGATGATAAGAGCTGGAGGGCTTCAATTCACAGGTATGAGACTGGGAAGACGAGGTATGCACATTATCGCCAGTCTGATGACATATTGGCAGATGCTGGATGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTCATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTCAGGTTCTCTCACTATTTAAATCCTGAAAGAATTCAGAAGGTAATCTGCAAAGGGACCGATTTATTTGATATGCTGCCGGAGGAGTACACTTTCAGGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTTCTTCTGGAAAATTCTGACAAGTATAAATTTCTTTTACCTGGAAATTGCAAGAGAGAGAGATGA
>Glyma05g30870.1 sequence type=predicted peptide gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWWMMGETGGNYCCKKSDDLCTNVCGQESSQVSGMSRIRCILRGLDVKTYIFMFAVIPMCVFGFYIHGQKISYFLRPLWEKAPKPFNVIPHYYNENVTMENLCRLHGWGVREYPRRVYDAVLFSNELEILTLRWKELYPYITEFVVLESNSTFTGLPKALVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDEVPSILHLQLKNYLYSFEFRVDDKSWRASIHRYETGKTRYAHYRQSDDILADAGWHCSFCFRRISDFIFKMKAYSHYDRVRFSHYLNPERIQKVICKGTDLFDMLPEEYTFRDIIGKMGPIPHSYSAVHLPAFLLENSDKYKFLLPGNCKRER* >Glyma05g30870.2 sequence type=predicted peptide gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRIRCILRGLDVKTYIFMFAVIPMCVFGFYIHGQKISYFLRPLWEKAPKPFNVIPHYYNENVTMENLCRLHGWGVREYPRRVYDAVLFSNELEILTLRWKELYPYITEFVVLESNSTFTGLPKALVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDEVPSILHLQLKNYLYSFEFRVDDKSWRASIHRYETGKTRYAHYRQSDDILADAGWHCSFCFRRISDFIFKMKAYSHYDRVRFSHYLNPERIQKVICKGTDLFDMLPEEYTFRDIIGKMGPIPHSYSAVHLPAFLLENSDKYKFLLPGNCKRER* >Glyma05g30870.3 sequence type=predicted peptide gene model=Glyma05g30870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRIRCILRGLDVKTYIFMFAVIPMCVFGFYIHGQKISYFLRPLWEKAPKPFNVIPHYYNENVTMENLCRLHGWGVREYPRRVYDAVLFSNELEILTLRWKELYPYITEFVVLESNSTFTGLPKALVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDEVPSILHLQLKNYLYSFEFRVDDKSWRASIHRYETGKTRYAHYRQSDDILADAGWHCSFCFRRISDFIFKMKAYSHYDRVRFSHYLNPERIQKVICKGTDLFDMLPEEYTFRDIIGKMGPIPHSYSAVHLPAFLLENSDKYKFLLPGNCKRER*
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