SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g30786

Feature Type:gene_model
Chromosome:Gm05
Start:36054452
stop:36059286
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g30786
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26400AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532 SoyBaseE_val: 3.00E-152ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
PTHR13290Panther TRANSLATION INITIATION FACTOR 4H FAMILY JGI ISS
PTHR13290:SF5Panther JGI ISS
PF06273PFAM Plant specific eukaryotic initiation factor 4B JGI ISS
UniRef100_B9SVM6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor, putative n=1 Tax=Ricinus communis RepID=B9SVM6_RICCO SoyBaseE_val: 4.00E-152ISS
UniRef100_I1K4F5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K4F5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g30786
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g30786 not represented in the dataset
Glyma05g30786 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30786
ParalogEvidenceComments
Glyma08g13980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30786 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g174400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g30786
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g30786
>Glyma05g30786.2   sequence type=transcript   gene model=Glyma05g30786   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACGTTAACGAAAAAGAAGGTGGGTAAGAGGGCCATGAATAGCCCTGATCCCAAATCCCATTCTCATTTCGCATCAAGCAACGCACGCACGCTCTCCTAATCCCCTTCCTCTTCCTCTTCCTCTGCATGTTCTCGGAGCTCCGGCTCCACTAGCGGAGCCCCGGCTCAGTTCAAACCCATTTCCGAAAACAAAACAAAAAACCTAACTCCATTTTCTCTTCCCTTTCGAGATCTCCAAATGTCGAAACCCTGGGGCAACATCGGAGCCTGGGCCGCCGATTCCGAACGGGCCGAGGCCGAGGAGGCTGAGGCCCAGGCTGCGGCCGCGGCGGTCGAGCCCCAAAGCTTTCCCAGCCTCAAGGAGGCCGTGAACTCCAAGCCCAAGAAGAAGAAGGGAACCACCATCACGCTTTCCGAGTTCAACCGTGGCGGTTTCGACCAGGGCCTTACGCGTGACGAGATGCTCGCCCTTCCCACCGGTCCCAAGGAGCGTTCCGCCGATGAAATGCCGTTCAACCGCCTTGGCGGCGGTTTCTCCTCCTATGACCGCTCCGGCGGTCGCTCGCGCGACCGAGATGGCGGCAACAACGAAGGTTCGTGGGGCGGAGGAGGCAGAAGATCCTACGGCGGATTCGACGAGGAGCGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCCAGGGCTGATGAGGTTGATAATTGGGCGTCTGTGAAGAAATCTCTCCCTGCCTTCGATTCCGGTCGCCAGAATCGCTTTGGTGGCGGCGGTTATGGCGGTTCTGGTGGTGGCGGTTTTGGTGGCGGCGGCGGCGGTGGCGGTTTTGGTGGTGCGTCTAGGGCTGATGATGTGGACAGTTGGGCGGCTGGTAAGAAGCCTGTTCCTGTTAGATCTTCCAATTTCGGTTCTGGTTTTCGCGATTCCGGAGTGGAGCCTGATCGGTGGACGAGAGGCGGTCCGCCGCGTGAGGTTGACCGGACGGAGCGACCGAGGCTGGTGTTAGATCCGCCACGAGGCGATGGTGTGGTGAACGAGTCTCCGGTGAAGGCATCGAATAAGGCAAATCCGTTTGGCGCGGCGAGGCCGCGGGAGCAGGTGTTGGCTGAAAAGGGTTTGGATTGGAAAAAGATGGATTCGGAGATTGAGACGAAGAAGACGAGCCGTCCCCCGAGTTCGCACTCTAGCAGGCCTTCAAGTGCTCAGTCCAATCGCTCTGAGGGTCCCGGGTTGCAGGGGACCGATGCTGTGGTGAAATCGAGGCCCAAGGTGAACCCCTTTGGGGATGCCAAGCCTAGAGAGGCTGTGCTGGGCGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGAATTGGAGCATCGCTCTGTTGACAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTAAAGAAAGAACTTGAGAAAGAGTCTACAATAAATTCAAACAAGGAATCTGTGGATGAGGCTGGTGGAGACCAAACCAGTACACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACTTCTTATCCGTGATTTGGACGACAAAGTTCGTTTTGGGCAGAAAGCCATTGAAAGGCCAGGTTCATCGGCAGGAAAGTCTTCTACTTTTTCTGATAGGCCACATTCTAGATCTGGCTCCTTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCATCCTAGTGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTGGCAGCCGAGACTTGAATAGGTGAGTAATATGTGTTATTTTTACATTATTTATGGCAACTGGTTAAGTTACAAAATTGACAGTGGCTTTGAATTCAATTTTGTTTA
Coding sequences of Glyma05g30786
>Glyma05g30786.1   sequence type=CDS   gene model=Glyma05g30786   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAACCCTGGGGCAACATCGGAGCCTGGGCCGCCGATTCCGAACGGGCCGAGGCCGAGGAGGCTGAGGCCCAGGCTGCGGCCGCGGCGGTCGAGCCCCAAAGCTTTCCCAGCCTCAAGGAGGCCGTGAACTCCAAGCCCAAGAAGAAGAAGGGAACCACCATCACGCTTTCCGAGTTCAACCGTGGCGGTTTCGACCAGGGCCTTACGCGTGACGAGATGCTCGCCCTTCCCACCGGTCCCAAGGAGCGTTCCGCCGATGAAATGCCGTTCAACCGCCTTGGCGGCGGTTTCTCCTCCTATGACCGCTCCGGCGGTCGCTCGCGCGACCGAGATGGCGGCAACAACGAAGGTTCGTGGGGCGGAGGAGGCAGAAGATCCTACGGCGGATTCGACGAGGAGCGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCCAGGGCTGATGAGGTTGATAATTGGGCGTCTGTGAAGAAATCTCTCCCTGCCTTCGATTCCGGTCGCCAGAATCGCTTTGGTGGCGGCGGTTATGGCGGTTCTGGTGGTGGCGGTTTTGGTGGCGGCGGCGGCGGTGGCGGTTTTGGTGGTGCGTCTAGGGCTGATGATGTGGACAGTTGGGCGGCTGGTAAGAAGCCTGTTCCTGTTAGATCTTCCAATTTCGGTTCTGGTTTTCGCGATTCCGGAGTGGAGCCTGATCGGTGGACGAGAGGCGGTCCGCCGCGTGAGGTTGACCGGACGGAGCGACCGAGGCTGGTGTTAGATCCGCCACGAGGCGATGGTGTGGTGAACGAGTCTCCGGTGAAGGCATCGAATAAGGCAAATCCGTTTGGCGCGGCGAGGCCGCGGGAGCAGGTGTTGGCTGAAAAGGGTTTGGATTGGAAAAAGATGGATTCGGAGATTGAGACGAAGAAGACGAGCCGTCCCCCGAGTTCGCACTCTAGCAGGCCTTCAAGTGCTCAGTCCAATCGCTCTGAGGGTCCCGGGTTGCAGGGGACCGATGCTGTGGTGAAATCGAGGCCCAAGGTGAACCCCTTTGGGGATGCCAAGCCTAGAGAGGCTGTGCTGGGCGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGAATTGGAGCATCGCTCTGTTGACAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTAAAGAAAGAACTTGAGAAAGAGTCTACAATAAATTCAAACAAGGAATCTGTGGATGAGGCTGGTGGAGACCAAACCAGTACACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACTTCTTATCCGTGATTTGGACGACAAAGTTCGTTTTGGGCAGAAAGCCATTGAAAGGCCAGGTTCATCGGCAGGAAAGTCTTCTACTTTTTCTGATAGGCCACATTCTAGATCTGGCTCCTTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCATCCTAGTGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTGGCAGCCGAGACTTGAATAGGTCAACGTCAAGAGAGAGATGGTGA

>Glyma05g30786.2   sequence type=CDS   gene model=Glyma05g30786   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAACCCTGGGGCAACATCGGAGCCTGGGCCGCCGATTCCGAACGGGCCGAGGCCGAGGAGGCTGAGGCCCAGGCTGCGGCCGCGGCGGTCGAGCCCCAAAGCTTTCCCAGCCTCAAGGAGGCCGTGAACTCCAAGCCCAAGAAGAAGAAGGGAACCACCATCACGCTTTCCGAGTTCAACCGTGGCGGTTTCGACCAGGGCCTTACGCGTGACGAGATGCTCGCCCTTCCCACCGGTCCCAAGGAGCGTTCCGCCGATGAAATGCCGTTCAACCGCCTTGGCGGCGGTTTCTCCTCCTATGACCGCTCCGGCGGTCGCTCGCGCGACCGAGATGGCGGCAACAACGAAGGTTCGTGGGGCGGAGGAGGCAGAAGATCCTACGGCGGATTCGACGAGGAGCGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCCAGGGCTGATGAGGTTGATAATTGGGCGTCTGTGAAGAAATCTCTCCCTGCCTTCGATTCCGGTCGCCAGAATCGCTTTGGTGGCGGCGGTTATGGCGGTTCTGGTGGTGGCGGTTTTGGTGGCGGCGGCGGCGGTGGCGGTTTTGGTGGTGCGTCTAGGGCTGATGATGTGGACAGTTGGGCGGCTGGTAAGAAGCCTGTTCCTGTTAGATCTTCCAATTTCGGTTCTGGTTTTCGCGATTCCGGAGTGGAGCCTGATCGGTGGACGAGAGGCGGTCCGCCGCGTGAGGTTGACCGGACGGAGCGACCGAGGCTGGTGTTAGATCCGCCACGAGGCGATGGTGTGGTGAACGAGTCTCCGGTGAAGGCATCGAATAAGGCAAATCCGTTTGGCGCGGCGAGGCCGCGGGAGCAGGTGTTGGCTGAAAAGGGTTTGGATTGGAAAAAGATGGATTCGGAGATTGAGACGAAGAAGACGAGCCGTCCCCCGAGTTCGCACTCTAGCAGGCCTTCAAGTGCTCAGTCCAATCGCTCTGAGGGTCCCGGGTTGCAGGGGACCGATGCTGTGGTGAAATCGAGGCCCAAGGTGAACCCCTTTGGGGATGCCAAGCCTAGAGAGGCTGTGCTGGGCGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGAATTGGAGCATCGCTCTGTTGACAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTAAAGAAAGAACTTGAGAAAGAGTCTACAATAAATTCAAACAAGGAATCTGTGGATGAGGCTGGTGGAGACCAAACCAGTACACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACTTCTTATCCGTGATTTGGACGACAAAGTTCGTTTTGGGCAGAAAGCCATTGAAAGGCCAGGTTCATCGGCAGGAAAGTCTTCTACTTTTTCTGATAGGCCACATTCTAGATCTGGCTCCTTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCATCCTAGTGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTGGCAGCCGAGACTTGAATAGGTGA
Predicted protein sequences of Glyma05g30786
>Glyma05g30786.1   sequence type=predicted peptide   gene model=Glyma05g30786   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKPWGNIGAWAADSERAEAEEAEAQAAAAAVEPQSFPSLKEAVNSKPKKKKGTTITLSEFNRGGFDQGLTRDEMLALPTGPKERSADEMPFNRLGGGFSSYDRSGGRSRDRDGGNNEGSWGGGGRRSYGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKSLPAFDSGRQNRFGGGGYGGSGGGGFGGGGGGGGFGGASRADDVDSWAAGKKPVPVRSSNFGSGFRDSGVEPDRWTRGGPPREVDRTERPRLVLDPPRGDGVVNESPVKASNKANPFGAARPREQVLAEKGLDWKKMDSEIETKKTSRPPSSHSSRPSSAQSNRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELEHRSVDRPETMEEKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSTHAILQQKEKELELLIRDLDDKVRFGQKAIERPGSSAGKSSTFSDRPHSRSGSFEDSRSVDFTDRPRSRGTGDMWMHPSDDRRQFQGSRERGWFSGSRDLNRSTSRERW*

>Glyma05g30786.2   sequence type=predicted peptide   gene model=Glyma05g30786   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKPWGNIGAWAADSERAEAEEAEAQAAAAAVEPQSFPSLKEAVNSKPKKKKGTTITLSEFNRGGFDQGLTRDEMLALPTGPKERSADEMPFNRLGGGFSSYDRSGGRSRDRDGGNNEGSWGGGGRRSYGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKSLPAFDSGRQNRFGGGGYGGSGGGGFGGGGGGGGFGGASRADDVDSWAAGKKPVPVRSSNFGSGFRDSGVEPDRWTRGGPPREVDRTERPRLVLDPPRGDGVVNESPVKASNKANPFGAARPREQVLAEKGLDWKKMDSEIETKKTSRPPSSHSSRPSSAQSNRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELEHRSVDRPETMEEKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSTHAILQQKEKELELLIRDLDDKVRFGQKAIERPGSSAGKSSTFSDRPHSRSGSFEDSRSVDFTDRPRSRGTGDMWMHPSDDRRQFQGSRERGWFSGSRDLNR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo