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Report for Sequence Feature Glyma05g30745

Feature Type:gene_model
Chromosome:Gm05
Start:36030967
stop:36035656
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g30745
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55270AT Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase phosphatase 1 | chr3:20496775-20499408 FORWARD LENGTH=784 SoyBaseE_val: 5.00E-166ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0010225GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-C SoyBaseN/AISS
GO:0010374GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex development SoyBaseN/AISS
GO:0016311GO-bp Annotation by Michelle Graham. GO Biological Process: dephosphorylation SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004725GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity SoyBaseN/AISS
GO:0008138GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity SoyBaseN/AISS
GO:0016791GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatase activity SoyBaseN/AISS
GO:0017017GO-mf Annotation by Michelle Graham. GO Molecular Function: MAP kinase tyrosine/serine/threonine phosphatase activity SoyBaseN/AISS
KOG1718 KOG Dual specificity phosphatase JGI ISS
PTHR10159Panther DUAL SPECIFICITY PROTEIN PHOSPHATASE JGI ISS
PF00782PFAM Dual specificity phosphatase, catalytic domain JGI ISS
UniRef100_G7J353UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=G7J353_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339CB2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339CB2 related cluster n=1 Tax=unknown RepID=UPI0002339CB2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g30745
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g30745 not represented in the dataset
Glyma05g30745 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30745
ParalogEvidenceComments
Glyma08g13940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30745 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g174000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g30745
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g30745
>Glyma05g30745.2   sequence type=transcript   gene model=Glyma05g30745   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGACGCATTATGTCTCGGTCAAACTGAATGAGCATGACCACCCAGCCCCACTTTTATTTCCATTTCTCGGCAAACTCCAAACTCTTCTTCAGTTCCCTCTGCCTCTTCTGTTTTACACACACCACCGCTTTCTCTCTTCTCTCTCTGCAAGATCCAAACTTTAAGTGTATGTGTTTGAATTCTCCTCTCTTTCTAACAAGAACGAGTCAGAAGTGGGTCACGGTCAATGGTTTTAGGTGAGAAAAAAACTCGAACCTAGCCGCAACACAACACCTATCAATACCATACCATAACCATTTCTTTTTTACCGTTCCAAGCTTTTGCTTTCGACCCATTATTACTTCTGTTAATGGGTTTAAAACCCAATTAAAAAGTTCGAATCTTGTCGATTATCCATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAATACTGGCTATAAATTGAAGATCAGGACAGGACTGTACAAACAAGAAGCTAATTAAGGTGAATGTTACTGTATCACAATTGATAGGGTGTGATTTGCTCCATCCACCAACCTTCTTTTTCTTTTGCTCCATGATACACCACTAAACTTCCCTTGGCAGCTTAACCTTTCTATTTTTTCTTCAGTGGGAGAGAAAGGATCACATTGCTGAGATCATTCCACAACTCAAATGCCTTCTTTGATCATAGTGTCTGGGAAATGCTTTACGTGTTAAGCAGACTTTGCCTGCATACAGACCACATCAACCACGTGAGATTAAGATTCTAGCCATTATAGGAAGACGTAAATGAAAATCATCTTTTGCAAAAGGAGGAGAGGTGGAAATAACAATAACAATAAAGGAAGGAACCACCAAATACATAGTTTCCATTATTAAGTAAT
Coding sequences of Glyma05g30745
>Glyma05g30745.1   sequence type=CDS   gene model=Glyma05g30745   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAA

>Glyma05g30745.2   sequence type=CDS   gene model=Glyma05g30745   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAA
Predicted protein sequences of Glyma05g30745
>Glyma05g30745.1   sequence type=predicted peptide   gene model=Glyma05g30745   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGEESNNNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVEIMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVRSRCQRFFHTNQRTVLNESRFHSSSTWTTLLF*

>Glyma05g30745.2   sequence type=predicted peptide   gene model=Glyma05g30745   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGEESNNNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVEIMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVRSRCQRFFHTNQRTVLNESRFHSSSTWTTLLF*






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