Glyma05g30670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g30670): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g30670): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g30670

Feature Type:	gene_model
Chromosome:	Gm05
Start:	35990487
stop:	35991790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g30670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16790	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein-related \| chr1:5744638-5745072 FORWARD LENGTH=144	SoyBase	E_val: 2.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K4E2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4E2_SOYBN	SoyBase	E_val: 3.00E-94	ISS

Expression Patterns of Glyma05g30670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g30670 not represented in the dataset	Glyma05g30670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30670

Paralog	Evidence	Comments
Glyma08g13860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g173100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g30670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g30670

Limit To All Plant Sequences

>Glyma05g30670.6   sequence type=transcript   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGGGATAAACCCTAACGCCGCGAGGCCAAGGCAACATTCATCCGAAGTTCTGCATCAAACACTGCTTGAACTTTGAAAAATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGATATTAGTATGTAATTATTAGTTTGTAGAAATATTTTTTAATGAAATGACTATGCTACCATTTTTTATGTCATTATAATTCTTGTTTCCAAAAGGCAACATAGAGTAGCACAATTTTCCTCCTCAACACCTCAATGCTAACCTGAAGACAAAAATACCTAGAAGGTTTGTACAGGACAGCTTTCCCCTTATTGGGTCATTCACCTTAAATAATCCAAAATCACATGTTTGATCCCAAAG

>Glyma05g30670.7   sequence type=transcript   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGGGATAAACCCTAACGCCGCGAGGCCAAGGCAACATTCATCCGAAGTTCTGCATCAAACACTGCTTGAACTTTGAATTTCTATTGCAGAAGGACGTGTCAACGTAAGCGTGTACGAATTGCAATGTTGAGCTCTTTTGTCACTTTTGTGACTTGAACAGCTACGCAATATTTCATTCGTAGTCTGTTCCATGGTCTCGTTGTGCCATTCCTTTTTGTTCATTTTTTTTTATTAACGTTGCTTCTTTTGGTGAACTCTCCCTTATTATTCCATGGTGGTTGTTCTAGTTTCCGAAGCATATATAAATTAATTCGTCTCGAATAACCGGTTTTAAACAGCGTGGTGTAATCTTCTCTAAGCTACCCTATGCTACCTGTCTTCTGGTACATTCAATTCATTACTATATATTCATTTTCCACGATTAAGAGCAGTGTCAATGACGTTCTAATGAAACTAATTTTTAAATTTCAGAATCTGAAAATGAGAATTTGAACGATTAAAGTAAAGTAATAAATACTGACGCTTGGCTATTAAAATTGTAGAAATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGATATTAGTATGTAATTATTAGTTTGTAGAAATATTTTTTAATGAAATGACTATGCTACCATTTTTTATGTCATTATAATTCTTGTTTCCAAAAGGCAACATAGAGTAGCACAATTTTCCTCCTCAACACCTCAATGCTAACCTGAAGACAAAAATACCTAGAAGGTTTGTACAGGACAGCTTTCCCCTTATTGGGTCATTCACCTTAAATAATCCAAAATCACATGTTTGATCCCAAAG

>Glyma05g30670.8   sequence type=transcript   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGGGATAAACCCTAACGCCGCGAGGCCAAGGCAACATTCATCCGAAGTTCTGCATCAAACACTGCTTGAACTTTGAAGCGTTGCGTTCTTTGTCAGTTTCTATTGCAGAAGGACGTGTCAACGTAAGCGTGTACGAATTGCAATGTTGAGCTCTTTTGTCACTTTTGTGACTTGAACAGCTACGCAATATTTCATTCGTAGTCTGTTCCATGGTCTCGTTGTGCCATTCCTTTTTGTTCATTTTTTTTTATTAACGTTGCTTCTTTTGGTGAACTCTCCCTTATTATTCCATGGTGGTTGTTCTAGTTTCCGAAGCATATATAAATTAATTCGTCTCGAATAACCGGTTTTAAACAGCGTGGTGTAATCTTCTCTAAGCTACCCTATGCTACCTGTCTTCTGGTACATTCAATTCATTACTATATATTCATTTTCCACGATTAAGAGCAGTGTCAATGACGTTCTAATGAAACTAATTTTTAAATTTCAGAATCTGAAAATGAGAATTTGAACGATTAAAGTAAAGTAATAAATACTGACGCTTGGCTATTAAAATTGTAGAAATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGATATTAGTATGTAATTATTAGTTTGTAGAAATATTTTTTAATGAAATGACTATGCTACCATTTTTTATGTCATTATAATTCTTGTTTCCAAAAGGCAACATAGAGTAGCACAATTTTCCTCCTCAACACCTCAATGCTAACCTGAAGACAAAAATACCTAGAAGGTTTGTACAGGACAGCTTTCCCCTTATTGGGTCATTCACCTTAAATAATCCAAAATCACATGTTTGATCCCAAAG

Coding sequences of Glyma05g30670

Limit To All Plant Sequences

>Glyma05g30670.5   sequence type=CDS   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGA

>Glyma05g30670.6   sequence type=CDS   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGA

>Glyma05g30670.7   sequence type=CDS   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGA

>Glyma05g30670.8   sequence type=CDS   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGCCAAATGTAACGATACCTAAAGTTGGACCTAAACCGTCGAGGAAAGTGAAGCTTCCGACGCCGAAGGAGCTGATATCACACTATGAATCTAAGGGTATGGACTCGCAAGATGCGTCGTTGAAGGTCATTGAGGATCTTCAGAAGGCTCTGTTTAGAGTCATATCCTCTGGCAAAGGTAAACACGACAAGCTATTGACTGAATCTTCTAGGAAGATTGATGCAATTAACAATAGACTCACTGTTCTTGACATGAAGCTTGATTCCAAGCCTGCTTATGTTGAAACTTTTGCAATTGGGCTTGCCTCTGGAGCTGCCCTCAAAGGTATTGGTGCAGTTGTGCCTCATATTATTGCCCCTCTTACTCAGATATGGAACTCTGTTTCCTCTGCCATTAAATCTTCCCCCCAATGA

Predicted protein sequences of Glyma05g30670

Limit To All Plant Sequences

>Glyma05g30670.5   sequence type=predicted peptide   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METPNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGKGKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIAPLTQIWNSVSSAIKSSPQ*

>Glyma05g30670.6   sequence type=predicted peptide   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METPNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGKGKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIAPLTQIWNSVSSAIKSSPQ*

>Glyma05g30670.7   sequence type=predicted peptide   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METPNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGKGKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIAPLTQIWNSVSSAIKSSPQ*

>Glyma05g30670.8   sequence type=predicted peptide   gene model=Glyma05g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METPNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGKGKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIAPLTQIWNSVSSAIKSSPQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain