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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54830 | AT | Annotation by Michelle Graham. TAIR10: DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein | chr5:22273394-22276117 FORWARD LENGTH=907 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| KOG4731 | KOG | Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains | JGI | ISS | |
| PTHR23130 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR23130:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03188 | PFAM | Eukaryotic cytochrome b561 | JGI | ISS | |
| PF03351 | PFAM | DOMON domain | JGI | ISS | |
| PF10517 | PFAM | Electron transfer DM13 | JGI | ISS | |
| UniRef100_Q9FFU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g54830/MBG8_9 n=1 Tax=Arabidopsis thaliana RepID=Q9FFU6_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A252 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A252 related cluster n=1 Tax=unknown RepID=UPI000233A252 | SoyBase | E_val: 0 | ISS |
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Glyma05g30571 not represented in the dataset |
Glyma05g30571 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g172000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30571.1 sequence type=CDS gene model=Glyma05g30571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCGCAGATCCCTCATCATCATCCTACACTTGTCGTTGTTGTCGTTCGGATATGCGGATCCCGCTCCCAATTGCACTCGCCTCAGCTCCGTCGTCAATTCGGAGTCGGAGTTCGAAATGGTTCAACACCAACTCCGAGGATCCCTGAAAATCAGGGACGATTGCTCCTTTAGGGTTTCCCAATTCGACATGCTTCCCGGTTCCGACGTCCACTGGTGGGGTGCGCAGGCTTCCGATTTCGATAACCTCACCGCCGGATTCATTGTTTCCAACTACGGATTGAACGGAACCTACAACAACTCCACCTTCGATGTGCATTTGTTGAGCAATGTTTCCTGGAGCATGATCAACGTCCTCGCCGTCTGGGATCGTGCCACCGCCTCCGATTTCGGCCACGTCGTGCTCCGCAAGGACGCCCCGGCGTCGCCTCCTCCTCCGACGGTGTTCGAGAATTGCAAGGTTTTGTCGAAGAATTTCAGGTTGAGGTGGAGTTTGAATGTGTCCGAGGATTCTCTTGAAATTGGGTTGGAGGCCGCGACTGGGATCACCAATTACATGGCTTTTGGGTGGGCTAATTCCAGTGCTCAAGATTCTGATCTCATGATTGGTGCTGATGTTGTCGTTGCAGGGTTTAAGGAAGATGGTATGCCCTTTGTGGATGATTTTTTCATTACTAAGTATAGTGAGTGTGTGAGAAATAGTGATGGAGTTGCTCAAGGGGTATGTCCTGATTCCTTTTATGAAGGCCCTGATGGGGTGGGTTTAGTCAACAATTCAATGTTGGTTTATGGCCATAGGAAGGATGGGGTGACCTTTGTCAGATACCGCAGGCATTTGACTAAGGTCGATGGAAAGTATGATCATCCCGTGAACCATTCAGCGAATATGAAGGTTATTTGGGCTTTGGGGCGTATCAAGCCTCCCGATTCTATTAATCCTTACTATCTTCCTCAGAATCATGGGGCCGTGAATTATGGCCATTTGGTTTTGAATGTCTCGGAGCATGTGAATGAGTGTACAGGTCCCTTGGATGCTGAAGACAAAGAAGATCAAGGTCTCATCACTGCAGATGCAAATGTTCCCTTGGTGGTTTCTTCTGCTCCGGCAATGCATTACCCCAACCCTCCAAATCCTGAAAAGGTTCTTTATATCAACAAAAAGGAAGCTCCTGTCTTGAGAGTGGAAAGAGGGGTGCCGGTCAAGTTTTCGATCCAAGCCGGGCACGATGTTGCACTTTATATTACTTCGGATCCGCTTGGTGGAAATGCTACCACGAGAAATCTGACTGAGACTATTTATGCTGGAGGTCCAGAGGCCCACGGAGTTCAAGCCAGTCCTACAGAATTAGTTTGGGCTCCTGACAGGAACACTCCTGATCACGTCTACTATCATTCCTTGTTCGACCAGAAGATGGGTTGGAAGGTCGAGGTGGTTGATGGGGGTCTATCGGACATGTATAATAACAGTGTCATTTTGGATGATCAACAGGTTACCTTCTTTTGGACATTGTCAAAGGATTCCATATCTATTGCAGCTCGTGGCGAGAAAAAAAGTGGTTATATTGCCATAGGGTTTGGAAGTGGAATGGTGAACAGCTATGTGTATGTGGGTTGGATTGATGATACTGGTGTGGGACATGTAAACACTTATTGGATTGATGGAAAGGATGCTTCAAGCATACACGGCACGCAGGAAAATTTGACACATGTGAGATGCAAAACAGAAAATGGCATCATTACTTTTGAGTTTACTCGTCCCTTGGACCCGTCTTGTAGGCGGGAAAAGAGGGTAGAATGTAAAAATATCGTTGATCCCACAACTCCTCTCAAAGTTGTTTGGGCAATGGGTGCTAAATGGACTGATGATCATCTTACTGACAGGAATATGCATTCTAGTACAAGTAATAGGGCTATTCTTGTACACCTGATGCGTGGTTCAGCAGAGGCGGAGCAGGATTTACTTCCTGTTTTGGCTGTGCATGGATTTATGATGTTTGTTGCATGGGGTATCCTGTTTCCTGGAGGGATATTGGCAGCCAGGTACTTAAAACATCTCAAGGGCGATGGATGGTACCGGATTCATGTTTACTTGCAATACTCAGGGTTAGTAATTGTTCTGCTTGCCCTTCTTTTTGCTGTGGCTGAGCTTAGGGGATTTTATTTCAGCTCAACTCATGTTAAATTTGGATTTGCTACTATATTGTTGGCTTGCATACAGCCAGCAAATGCTTTCCTAAGGCCTCCAAAACCAGCCAATGGGGAGCAGGCATCCTCCAAGAGGGTTATTTGGGAGTGTTTTCACACAATTGTTGGTAGATGTGCCATTGTTGTTGGCATTGCTGCACTTTTTACTGGGATGAAGCATCTAGGAGACAGATACGATGTGGAAAATGTCCATGGACTCAGATGGGCTATGGCAATTTGGTTTTTAATTGGTGCATTGATTGTTATTTATTTGGAATACCATGAAAGGCAGCGAATAGGGCGGCAGATATCTGGAAGAGGCAATTGGGTGCTTGGTAATCTTGAGGAAGATGATTCAGTTGATCTCTTGAGGTCAACCAGAACAACTGCAGATAAAGAGTTGCAACACTCTGCGAGAATGGAAGTCCAATTAGAACCTTTGAACAGATAA
>Glyma05g30571.1 sequence type=predicted peptide gene model=Glyma05g30571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRSLIIILHLSLLSFGYADPAPNCTRLSSVVNSESEFEMVQHQLRGSLKIRDDCSFRVSQFDMLPGSDVHWWGAQASDFDNLTAGFIVSNYGLNGTYNNSTFDVHLLSNVSWSMINVLAVWDRATASDFGHVVLRKDAPASPPPPTVFENCKVLSKNFRLRWSLNVSEDSLEIGLEAATGITNYMAFGWANSSAQDSDLMIGADVVVAGFKEDGMPFVDDFFITKYSECVRNSDGVAQGVCPDSFYEGPDGVGLVNNSMLVYGHRKDGVTFVRYRRHLTKVDGKYDHPVNHSANMKVIWALGRIKPPDSINPYYLPQNHGAVNYGHLVLNVSEHVNECTGPLDAEDKEDQGLITADANVPLVVSSAPAMHYPNPPNPEKVLYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDPLGGNATTRNLTETIYAGGPEAHGVQASPTELVWAPDRNTPDHVYYHSLFDQKMGWKVEVVDGGLSDMYNNSVILDDQQVTFFWTLSKDSISIAARGEKKSGYIAIGFGSGMVNSYVYVGWIDDTGVGHVNTYWIDGKDASSIHGTQENLTHVRCKTENGIITFEFTRPLDPSCRREKRVECKNIVDPTTPLKVVWAMGAKWTDDHLTDRNMHSSTSNRAILVHLMRGSAEAEQDLLPVLAVHGFMMFVAWGILFPGGILAARYLKHLKGDGWYRIHVYLQYSGLVIVLLALLFAVAELRGFYFSSTHVKFGFATILLACIQPANAFLRPPKPANGEQASSKRVIWECFHTIVGRCAIVVGIAALFTGMKHLGDRYDVENVHGLRWAMAIWFLIGALIVIYLEYHERQRIGRQISGRGNWVLGNLEEDDSVDLLRSTRTTADKELQHSARMEVQLEPLNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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