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Report for Sequence Feature Glyma05g30430
Feature Type: gene_model
Chromosome: Gm05
Start: 35817049
stop: 35825528
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g30430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G73720 AT
Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511
SoyBase E_val: 0 ISS
GO:0008380 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG0275
KOG
Conserved WD40 repeat-containing protein
JGI ISS
PTHR22848 Panther
WD40 REPEAT PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_F8WL82 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat family protein n=1 Tax=Citrus unshiu RepID=F8WL82_CITUN
SoyBase E_val: 0 ISS
UniRef100_I1K4C0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4C0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g30430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g30430
Paralog Evidence Comments
Glyma08g13560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g30430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g170500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g30430
Transcripts of Glyma05g30430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g30430.2 sequence type=transcript gene model=Glyma05g30430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAATAACGTTAGTACCGCGATTATGGCCTGGGAAGAACATTGGAAGTGATAAGTGATAAAACAGAGTTTCGTTGAATCTGCACTAAAACCCTACGCACACATCTTGGTGTAAGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGATGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACTTTTCAGATGCTGCAGAACGAATGCCAGGTTTCTCTGAACACTGTTGACAGCATTGAAACCTTTGTTGCTGATATTAATAGTGGAAGATGGGATGCGATATTGCCTCAAGTTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTATGAGCAGATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGGGTTACTTCCTCCAGGAACGCAATTTGATTTGTTTCGTGGAACAGCTGCTATGAAACAAGATGTGGATGACATGTATCCAACAACTCTTTCTCACACGATAAAGTTTGGGACAAAAAGTCATGCAGAATGTGCTTGCTTTTCACCAGATGGGCAGTTTCTTGTATCATGCTCAGTTGATGGGTTTATTGAGGTGTGGGATTACATAAGTGGAAAGCTGAAGAAAGATCTACAGTACCAGGCTGATGAAGTGTTCATGATGCATGATGATGCTGTGCTTTGTGTAGACTTTAGCAGAGATTCAGAAATGCTTGCATCTGGGTCTCAAGATGGAAAGATTAAAGTCTGGCGTATTAGGACTGGTCAGTGCTTACGGCGTCTTGAACGTGCTCATTCTCAAGGTGTCACAAGTGTTTCCTTCTCCCGTGATGGAAGCCAGTTATTAAGCACTTCATTTGACAGCACAGCAAGAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGGTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCAGCCTGTGTTTCACCTAAAGGAGAATGGATTTACTGTGTTGGTGAAGACAGCTATCAATCTGGCAAATTGGAGCATCTAATGAAGGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTCGCAACATTTAGTGAAGACTGCACAATGAAGTCGTGGAAGCCATGAATCTTGTCTGCTTTAAGTCTATTTCTATTCTATCTTGTTAACATAATTGAGCATCTGTGTAGTTTGTGCAATGTATATATTCAGGAGTTTAATTTTAATGTATTGTTGGTAAAATTATTTTATATTGTTGACGAATGATATGTTGGTAGAAAACCGATGCTGAGGTGAGTTATTGACAGATTGAAAATTCAAAATGTTTATTTACAATTTTTACTTCAGTTTTTATTTTATTTTT
Coding sequences of Glyma05g30430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g30430.1 sequence type=CDS gene model=Glyma05g30430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTACGCTTGAAATTGAAGCTCGAGATGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACTTTTCAGATGCTGCAGAACGAATGCCAGGTTTCTCTGAACACTGTTGACAGCATTGAAACCTTTGTTGCTGATATTAATAGTGGAAGATGGGATGCGATATTGCCTCAAGTTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTATGAGCAGATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGGGTTACTTCCTCCAGGAACGCAATTTGATTTGTTTCGTGGAACAGCTGCTATGAAACAAGATGTGGATGACATGTATCCAACAACTCTTTCTCACACGATAAAGTTTGGGACAAAAAGTCATGCAGAATGTGCTTGCTTTTCACCAGATGGGCAGTTTCTTGTATCATGCTCAGTTGATGGGTTTATTGAGGTGTGGGATTACATAAGTGGAAAGCTGAAGAAAGATCTACAGTACCAGGCTGATGAAGTGTTCATGATGCATGATGATGCTGTGCTTTGTGTAGACTTTAGCAGAGATTCAGAAATGCTTGCATCTGGGTCTCAAGATGGAAAGATTAAAGTCTGGCGTATTAGGACTGGTCAGTGCTTACGGCGTCTTGAACGTGCTCATTCTCAAGGTGTCACAAGTGTTTCCTTCTCCCGTGATGGAAGCCAGTTATTAAGCACTTCATTTGACAGCACAGCAAGAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGGTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCAGCCTGTGTTTCACCTAAAGGAGAATGGATTTACTGTGTTGGTGAAGACAGGAATATGTACTGCTTTAGCTATCAATCTGGCAAATTGGAGCATCTAATGAAGGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTCGCAACATTTAGTGAAGACTGCACAATGAAGTCGTGGAAGCCATGA
>Glyma05g30430.2 sequence type=CDS gene model=Glyma05g30430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTACGCTTGAAATTGAAGCTCGAGATGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACTTTTCAGATGCTGCAGAACGAATGCCAGGTTTCTCTGAACACTGTTGACAGCATTGAAACCTTTGTTGCTGATATTAATAGTGGAAGATGGGATGCGATATTGCCTCAAGTTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTATGAGCAGATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGGGTTACTTCCTCCAGGAACGCAATTTGATTTGTTTCGTGGAACAGCTGCTATGAAACAAGATGTGGATGACATGTATCCAACAACTCTTTCTCACACGATAAAGTTTGGGACAAAAAGTCATGCAGAATGTGCTTGCTTTTCACCAGATGGGCAGTTTCTTGTATCATGCTCAGTTGATGGGTTTATTGAGGTGTGGGATTACATAAGTGGAAAGCTGAAGAAAGATCTACAGTACCAGGCTGATGAAGTGTTCATGATGCATGATGATGCTGTGCTTTGTGTAGACTTTAGCAGAGATTCAGAAATGCTTGCATCTGGGTCTCAAGATGGAAAGATTAAAGTCTGGCGTATTAGGACTGGTCAGTGCTTACGGCGTCTTGAACGTGCTCATTCTCAAGGTGTCACAAGTGTTTCCTTCTCCCGTGATGGAAGCCAGTTATTAAGCACTTCATTTGACAGCACAGCAAGAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGGTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCAGCCTGTGTTTCACCTAAAGGAGAATGGATTTACTGTGTTGGTGAAGACAGCTATCAATCTGGCAAATTGGAGCATCTAATGAAGGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTCGCAACATTTAGTGAAGACTGCACAATGAAGTCGTGGAAGCCATGA
Predicted protein sequences of Glyma05g30430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g30430.1 sequence type=predicted peptide gene model=Glyma05g30430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTLEIEARDVIKIVLQFCKENSLHQTFQMLQNECQVSLNTVDSIETFVADINSGRWDAILPQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLDHLLVRTYFDPNEAYQDSTKEKRRAQIAQAIAAEVTVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDMYPTTLSHTIKFGTKSHAECACFSPDGQFLVSCSVDGFIEVWDYISGKLKKDLQYQADEVFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDAIFTNDGSRVITASSDCTIKVWDVKTTDCIQTFKPPPPLRGGDASVNSVHIFPKNTDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNMYCFSYQSGKLEHLMKVHEKEVIGVTHHPHRNLVATFSEDCTMKSWKP*
>Glyma05g30430.2 sequence type=predicted peptide gene model=Glyma05g30430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTLEIEARDVIKIVLQFCKENSLHQTFQMLQNECQVSLNTVDSIETFVADINSGRWDAILPQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLDHLLVRTYFDPNEAYQDSTKEKRRAQIAQAIAAEVTVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDMYPTTLSHTIKFGTKSHAECACFSPDGQFLVSCSVDGFIEVWDYISGKLKKDLQYQADEVFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLKSGKMLKEFRGHTSYVNDAIFTNDGSRVITASSDCTIKVWDVKTTDCIQTFKPPPPLRGGDASVNSVHIFPKNTDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDSYQSGKLEHLMKVHEKEVIGVTHHPHRNLVATFSEDCTMKSWKP*