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Report for Sequence Feature Glyma05g30400

Feature Type:gene_model
Chromosome:Gm05
Start:35790053
stop:35794527
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g30400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11400AT Annotation by Michelle Graham. TAIR10: partner of Y14-MAGO | chr1:3838777-3839978 FORWARD LENGTH=204 SoyBaseE_val: 3.00E-70ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0010628GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG4325 KOG Uncharacterized conserved protein JGI ISS
PTHR22959Panther PYM PROTEIN JGI ISS
PF09282PFAM Mago binding JGI ISS
UniRef100_D7KME2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Partner of Y14-mago n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KME2_ARALL SoyBaseE_val: 6.00E-70ISS
UniRef100_UPI0002339CA9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339CA9 related cluster n=1 Tax=unknown RepID=UPI0002339CA9 SoyBaseE_val: 5.00E-137ISS

Expression Patterns of Glyma05g30400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g30400
ParalogEvidenceComments
Glyma08g13520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g30400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g170200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g30400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g30400
>Glyma05g30400.2   sequence type=transcript   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTATAAGGGAAGGTGCCTTATATTGATTGGTAGTAGAAGTAATTTTGTTTGAATAAGTGCTTGAGACAGAGACGCAGCATAAGCATATAGCAAGAAGAAGAAGAAGTAGTAGTTGAAAGAAAGATGAGCGACGAGGAAAGAACGAAGCAAATAGCGGAGCTGAGCAAAAGCCTGAAAGAAGGAGAGAGAATCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGTTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCCTGAAAAAGGAGATGGGCTCGGCTGGGCCTCCCGGCTACGACCCCGACGCCGATTCCAAGCCCAAGCCCAAGCCCAAGACCAAGTCCGTCAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGAGAGTGGGAAGCAGGAATTTGTGGAGGCATTGACCTCGCAGGTAAATGAACTCGCTGTGCAAGATTCCCAAGCTCAAGATATTGATAAAAGAATTCGAGCTCTCAGAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTACAGAGCAGAATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCATAGGGAGTTAAAGCTATTGGAAGATGAGAAGGGTGAAACAACCGTATCATGAACAAAGTTTTCGAAATTGCATGACAACAATGTGTAGTTTTATCCATGTCTTCTTGAAAGATATATTCCATGGAAACAGGTTTACCAAAGATTTTCCTTTAATCGCCATCTTTTGTGTGCAACTTGTCAGATAAAGTCAGGCTGAATTTGGATGAAATTTTCAACAAGTTATAGGAAAGGAAAATTTAAAAGTAAAATCAATTTTCTCAAAGTTGAAAAGTATATATATCTTGATTTTAACTTGTAAAAGGACTGATTG

>Glyma05g30400.3   sequence type=transcript   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTATATTGATTGGTAGTAGAAGTAATTTTGTTTGAATAAGTGCTTGAGACAGAGACGCAGCATAAGCATATAGCAAGAAGAAGAAGAAGTAGTAGTTGAAAGAAAGATGAGCGACGAGGAAAGAACGAAGCAAATAGCGGAGCTGAGCAAAAGCCTGAAAGAAGGAGAGAGAATCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGTTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCCTGAAAAAGGAGATGGGCTCGGCTGGGCCTCCCGGCTACGACCCCGACGCCGATTCCAAGCCCAAGCCCAAGCCCAAGACCAAGTCCGTCAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGAGAGTGGGAAGCAGGAATTTGTGGAGGCATTGACCTCGCAGGTAAATGAACTCGCTGTGCAAGATTCCCAAGCTCAAGATATTGATAAAAGAATTCGAGCTCTCAGAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTACAGAGCAGAATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCATAGGGAGTTAAAGCTATTGGAAGATGAGAAGGGTGAAACAACCGTATCATGAACAAAGTTTTCGAAATTGCATGACAACAATGTGTAGTTTTATCCATGTCTTCTTGAAAGATATATTCCATGGAAACAGCTGCAGGAAATGTCGTGAGTGCAGTTTGAGTCCCAAAAAGGGCCCTACAGCCCAGCTAATCATTTCTCACTTGTACATTTCCTGGTCAGTATAATTTTCTGAAAATTATTACCTCCTTGGGCCACGTAATTTTCCTAAGCTCATAACTATTTGCTGTAAAACTTTGTTGGGCTATCCACTCTGAAGCCTGAATTAGTATGAGTGGAGGAAGTTGTGGCTTCATGTGGTAATCTTAACGGTGTTCGATTTCTTGATTGAGTACATTTGGTTTATGGAAATGTCCTTTTTAATTGCCCTCGACTGAGATTATGCTGTGTTCTTGACACTTTATTTTATTCTATTTTATGTTGATTTT
Coding sequences of Glyma05g30400
>Glyma05g30400.1   sequence type=CDS   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACGAGGAAAGAACGAAGCAAATAGCGGAGCTGAGCAAAAGCCTGAAAGAAGGAGAGAGAATCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGTTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGACTGAAAAAGGAGATGGGCTCGGCTGGGCCTCCCGGCTACGACCCCGACGCCGATTCCAAGCCCAAGCCCAAGCCCAAGACCAAGTCCGTCAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGAGAGTGGGAAGCAGGAATTTGTGGAGGCATTGACCTCGCAGGTAAATGAACTCGCTGTGCAAGATTCCCAAGCTCAAGATATTGATAAAAGAATTCGAGCTCTCAGAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTACAGAGCAGAATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCATAGGGAGTTAAAGCTATTGGAAGATGAGAAGGGTGAAACAACCGTATCATGA

>Glyma05g30400.2   sequence type=CDS   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACGAGGAAAGAACGAAGCAAATAGCGGAGCTGAGCAAAAGCCTGAAAGAAGGAGAGAGAATCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGTTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCCTGAAAAAGGAGATGGGCTCGGCTGGGCCTCCCGGCTACGACCCCGACGCCGATTCCAAGCCCAAGCCCAAGCCCAAGACCAAGTCCGTCAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGAGAGTGGGAAGCAGGAATTTGTGGAGGCATTGACCTCGCAGGTAAATGAACTCGCTGTGCAAGATTCCCAAGCTCAAGATATTGATAAAAGAATTCGAGCTCTCAGAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTACAGAGCAGAATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCATAGGGAGTTAAAGCTATTGGAAGATGAGAAGGGTGAAACAACCGTATCATGA

>Glyma05g30400.3   sequence type=CDS   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACGAGGAAAGAACGAAGCAAATAGCGGAGCTGAGCAAAAGCCTGAAAGAAGGAGAGAGAATCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGTTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCCTGAAAAAGGAGATGGGCTCGGCTGGGCCTCCCGGCTACGACCCCGACGCCGATTCCAAGCCCAAGCCCAAGCCCAAGACCAAGTCCGTCAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGAGAGTGGGAAGCAGGAATTTGTGGAGGCATTGACCTCGCAGGTAAATGAACTCGCTGTGCAAGATTCCCAAGCTCAAGATATTGATAAAAGAATTCGAGCTCTCAGAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTACAGAGCAGAATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCATAGGGAGTTAAAGCTATTGGAAGATGAGAAGGGTGAAACAACCGTATCATGA
Predicted protein sequences of Glyma05g30400
>Glyma05g30400.1   sequence type=predicted peptide   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEERTKQIAELSKSLKEGERIVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGLKKEMGSAGPPGYDPDADSKPKPKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEESGKQEFVEALTSQVNELAVQDSQAQDIDKRIRALRKKIRLTEALEQKSTEQNLKPEQLEKLAKLEDWHRELKLLEDEKGETTVS*

>Glyma05g30400.2   sequence type=predicted peptide   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEERTKQIAELSKSLKEGERIVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALLKKEMGSAGPPGYDPDADSKPKPKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEESGKQEFVEALTSQVNELAVQDSQAQDIDKRIRALRKKIRLTEALEQKSTEQNLKPEQLEKLAKLEDWHRELKLLEDEKGETTVS*

>Glyma05g30400.3   sequence type=predicted peptide   gene model=Glyma05g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEERTKQIAELSKSLKEGERIVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALLKKEMGSAGPPGYDPDADSKPKPKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEESGKQEFVEALTSQVNELAVQDSQAQDIDKRIRALRKKIRLTEALEQKSTEQNLKPEQLEKLAKLEDWHRELKLLEDEKGETTVS*






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