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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71180 | AT | Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein | chr1:26832335-26833291 FORWARD LENGTH=318 | SoyBase | E_val: 2.00E-105 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG0409 | KOG | Predicted dehydrogenase | JGI | ISS | |
| PTHR22981 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22981:SF31 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03446 | PFAM | NAD binding domain of 6-phosphogluconate dehydrogenase | JGI | ISS | |
| UniRef100_G7L8W3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L8W3_MEDTR | SoyBase | E_val: 1.00E-169 | ISS |
| UniRef100_I1K4B0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4B0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g30310 not represented in the dataset |
Glyma05g30310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g169300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30310.1 sequence type=CDS gene model=Glyma05g30310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACGCCGTACCCAACTCCGATCTCAACCTCCGAAACCCGAATCGGCTGGATCGGCATCGGCGTAATGGGCTTCGCCATGGCCTCTCGCCTCCTTTCTGCTGGCTACACCCTCTCTTTCTACGCCCGCAACCCTTCCAACCCTAACGCCCTCTCTCTCCAATCCCAAGGCGCCACCCTGGCCCAATCCCCGGCCCAACTGGCCCAACTCTCCGACGTCCTCTTCACCATGGTGGGCCACCCCTCCGACGTTCGCTCCCTCCTCCTCGACTCCCCCGTCCTCTCCTCCCTCCGCCCCAACTCCGTCGTCGTCGACACCACCAGCTCCCACCCCGACCTCGCCCGCCAGATCTTCTCCGCAGCACGCTCCCTCGACGCCTGGTCCGTCGACGCCCCCGTCTCCGGCGGCGACATCGGCGCGCGCGACGGCAAGCTCGCCATCCTAGCCGCCGGAGAAAAAGCCGTAGTCGAATGGCTGAGCCCTCTGTTCTCGATCCTCGGGAGAGCCACTTACATGGGCCCCGCGGGGTGCGGGCAGAGCTGCAAGATCGCGAACCAGATCACGATTGGCGCGAACTTGATCGGGCTGAGCGAGGGGCTGGTGTTCGCCAAGCGTGCGGGGCTGGACCTGAGGGAGTTCGTGGAAGCCATAAAAGACGGTGCTGCGGGTTCGAAGGCGCTTGAATTGTTCGGGGAGAGGATGATTGAGAGGGATTTTCGACCAGGGGGTTTTGCGGAGTATCAGGTTAAGGATTTGGGGATGGGGGTTGATGTTGTGGAAGGAGGAGATGATGCTCATCTTGTTGTCTTGCCAGGGGCTTCCTTGTCTAAACAGTTGTTTTCTAGCATGCTGGCTAATGGTCAGGGGAAGCTTGGCAGCCAAGGGATTATCTCTGTTATTGAGAGGATCAATGGGATCAATCAATAA
>Glyma05g30310.1 sequence type=predicted peptide gene model=Glyma05g30310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTPYPTPISTSETRIGWIGIGVMGFAMASRLLSAGYTLSFYARNPSNPNALSLQSQGATLAQSPAQLAQLSDVLFTMVGHPSDVRSLLLDSPVLSSLRPNSVVVDTTSSHPDLARQIFSAARSLDAWSVDAPVSGGDIGARDGKLAILAAGEKAVVEWLSPLFSILGRATYMGPAGCGQSCKIANQITIGANLIGLSEGLVFAKRAGLDLREFVEAIKDGAAGSKALELFGERMIERDFRPGGFAEYQVKDLGMGVDVVEGGDDAHLVVLPGASLSKQLFSSMLANGQGKLGSQGIISVIERINGINQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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