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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61000 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). | chr1:22471096-22474046 REVERSE LENGTH=440 | SoyBase | E_val: 6.00E-135 | ISS |
| GO:0000775 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4438 | KOG | Centromere-associated protein NUF2 | JGI | ISS | |
| PTHR21650 | Panther | MEMBRALIN/KINETOCHORE PROTEIN NUF2 | JGI | ISS | |
| PTHR21650:SF2 | Panther | KINETOCHORE PROTEIN NUF2 | JGI | ISS | |
| PF03800 | PFAM | Nuf2 family | JGI | ISS | |
| UniRef100_B9STF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinetochore protein nuf2, putative n=1 Tax=Ricinus communis RepID=B9STF6_RICCO | SoyBase | E_val: 2.00E-170 | ISS |
| UniRef100_I1K4A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4A6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g30280 not represented in the dataset |
Glyma05g30280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g169000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g30280.2 sequence type=transcript gene model=Glyma05g30280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTGTACATATAGTCTCGTCTCGTATGAGTCGAAGCCCGAATTCTCTCGAGTCGAGGTTGCGTTTGGACTTTGGAGAAGAAGAAAATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGGTATGTTCTTGTGCAAGCATTGCTGTGTCTCCATTTCTGGCTACATGGTTTAAGAATGAGTAATGATAATTTTTACGAAACACATTCTGTAAAACCTGTTCACAAGTAACCTGCATGATTTTTGTCCAATAATTTTGTTTTCCTTTTAAATAGCATTTGGTGATTGAAAACCAGCACATTTGTACGCCACATTATTTTTTAATGATTTTTGTTGAAAACTTTCATGCTACATAGAACTGCTCTTTAAGCATGAATATTTGTTACTACTAGCATGTTTTACCTCCAACTTTTTCGACTTGTTTTTCCTTAGTTGAGCAGATGGAAGAATCGAGGAAGCAATTGGAGAAAGAGTCCAATATTATGTGGGAAGAAGCAACTAAATACTTAAGTAGTACGAAATCAGATGTTGAATCTAAGAGATCTGCTACAGAAACAAGGCAGAAAAATGTTGAGGCTGTTTTATCTGAGGTGGCATTTCTTAAGGTTCATGATATATCAATTATATGTGGTGAATGAATAAATTGTTATTTCTTATCTGCAATTGACAGGTGGATGCCATAAGTAGTAAAATTATATCAGTAAAAGAAGCTGGAGCAGTTAAAGTGGCACTGTTAGTGCGCAAATGTGAAGAGCTAGTAGAAGCGTTTCACAACTATGCGAATCCGATTGCACGCGTGATTGAATCTGAGCAAAGAAGACTCGGGGCCACTAAAGGAGGTGGATTTGGCATTTCAGATCCGGTTTAATCATGTATAGACTACTACCAAAAATCAAATTATACTAGAGTGTTTATTTATTTATTTGACACAGCTAGAGTGCATAGTTTAGTTGAGTACATGTTAGCATGAAAAATCTGGAAGAATTTTTGCAGAGGTTATGCCTCAATCACATCGACATCTTGCTGCAGAATTGTGTAGTGCCTATTCTGTTCACCCTGTTTCTTCCATTCTTAGCCCAATAGTTGAATCAATGTGTTGTTTCCTGTGATGGTTTGCTCTATATGTGAATATGCCTCTAATTGAATGAAAATTTGCCATGCGTAATGTATCATTCTATTTAATTTTT
>Glyma05g30280.1 sequence type=CDS gene model=Glyma05g30280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGTTGAGCAGATGGAAGAATCGAGGAAGCAATTGGAGAAAGAGTCCAATATTATGTGGGAAGAAGCAACTAAATACTTAAGTAGTACGAAATCAGATGTTGAATCTAAGAGATCTGCTACAGAAACAAGGCAGAAAAATGTTGAGGCTGTTTTATCTGAGGTGGATGCCATAAGTAGTAAAATTATATCAGTAAAAGAAGCTGGAGCAGTTAAAGTGGCACTGTTAGTGCGCAAATGTGAAGAGCTAGTAGAAGCGTTTCACAACTATGCGAATCCGATTGCACGCGTGATTGAATCTGAGCAAAGAAGACTCGGGGCCACTAAAGGAGGTGGATTTGGCATTTCAGATCCGGTTTAA >Glyma05g30280.2 sequence type=CDS gene model=Glyma05g30280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGGTATGTTCTTGTGCAAGCATTGCTGTGTCTCCATTTCTGGCTACATGGTTTAA
>Glyma05g30280.1 sequence type=predicted peptide gene model=Glyma05g30280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQLEFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQEQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKVEQMEESRKQLEKESNIMWEEATKYLSSTKSDVESKRSATETRQKNVEAVLSEVDAISSKIISVKEAGAVKVALLVRKCEELVEAFHNYANPIARVIESEQRRLGATKGGGFGISDPV* >Glyma05g30280.2 sequence type=predicted peptide gene model=Glyma05g30280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQLEFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQEQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKGMFLCKHCCVSISGYMV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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