Glyma05g29850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g29850

Feature Type:	gene_model
Chromosome:	Gm05
Start:	35331488
stop:	35333773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13450	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr4:7815146-7815904 REVERSE LENGTH=219	SoyBase	E_val: 9.00E-73	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_G7L828	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Medicago truncatula RepID=G7L828_MEDTR	SoyBase	E_val: 6.00E-95	ISS
UniRef100_I1K466	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K466_SOYBN	SoyBase	E_val: 8.00E-155	ISS

Expression Patterns of Glyma05g29850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29850

Paralog	Evidence	Comments
Glyma08g12950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g165400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29850

Limit To All Plant Sequences

>Glyma05g29850.1   sequence type=CDS   gene model=Glyma05g29850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGGCATGGCGAGTAACCGCAACCGGAGCGCGAGCGCGCAAGAAGCCCGCAAGGTGATGGTGGTGGCGGACCCGACGCGGGAATCGGCGGGCGCGTTGCAGTACGCGCTGGCGCATGCGGTGATCGAGCAAGACGAGCTGATTCTGCTGCACGTTGAGAACCCTAGCTCGTGGCGCCACACCATTTCGACGTTCCTGAAGATGCCGTCGTTGGGAAGCTCAACCACTGCGTCGCTGGACCTTGGAGGAGGGGGAGCCGCGGCGGATGGAGAAGGGTTCGATTTTCTGGAGGAGATGAAGCATGCATGCAGGGTTTCTCAGCCGAAAATGAAGGTGCGTGTGATGAAGGTGGAGACCGATGGAAGAGACAAGGCTAGCACTATTCTTTCTCAGAGCAAAACGCATGGGGTTGATGTCGTAGTTATAGGCCAGAAGCGCAATATTACTTCGGCGTTATTAGGATATAAGCGACCTGCAGGTGGATCTATGAAAGGGGTGAAAGCGATAGACACTGCAGAGTATTTGATTCAAAACAGTTCGTGCACCTGTGTTAGTGTACAGAGAAAAGGCCAAAATGGAGGCTTTGTTCTCAACTCCAAAACCCACAGAAATTTCTGGCTCTTAGCCTAA

Predicted protein sequences of Glyma05g29850

Limit To All Plant Sequences

>Glyma05g29850.1   sequence type=predicted peptide   gene model=Glyma05g29850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQGMASNRNRSASAQEARKVMVVADPTRESAGALQYALAHAVIEQDELILLHVENPSSWRHTISTFLKMPSLGSSTTASLDLGGGGAAADGEGFDFLEEMKHACRVSQPKMKVRVMKVETDGRDKASTILSQSKTHGVDVVVIGQKRNITSALLGYKRPAGGSMKGVKAIDTAEYLIQNSSCTCVSVQRKGQNGGFVLNSKTHRNFWLLA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain