Glyma05g29830 - SoyBase

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Report for Sequence Feature Glyma05g29830

Feature Type:	gene_model
Chromosome:	Gm05
Start:	35317051
stop:	35321611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04420	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr1:1191634-1193699 FORWARD LENGTH=412	SoyBase	E_val: 6.00E-89	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity	SoyBase	N/A	ISS
KOG1575	KOG	Voltage-gated shaker-like K+ channel, subunit beta/KCNAB	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF115	Panther	ALDOSE REDUCTASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_G7L822	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase Tas aldo/keto reductase family n=1 Tax=Medicago truncatula RepID=G7L822_MEDTR	SoyBase	E_val: 3.00E-161	ISS
UniRef100_I1K464	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K464_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29830

Paralog	Evidence	Comments
Glyma08g12930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g165200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g29830

Limit To All Plant Sequences

>Glyma05g29830.2   sequence type=transcript   gene model=Glyma05g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTTAGTTTTTCTGCGAGCTTTCTCCCTTGACACTCATACAGCCGAGGACAATGTCAGGTGTTCCTCTCTTCAATCTCGCTCCTAATCTCACTGTCTCGAGGCTCTGCTTAGGAACCATGACTTTCGGGGAGCAGAACACGCTGGCGGAGTCGTTTCAGCTTCTGGACCAAGCCTTCCATGCCGGCATCAACTTCTTCGACTCCGCCGAAATGTATCCTGTGCCTCAGCGCCCTCGCACGTGCGGCAGGAGCGAAGAGTATCTCGGCCGTTGGATTTCACAACGAAAAATCCCCAGGGATAGCCTCGTAATTGCATCTAAGGTTGCTGGACCTTCTGGGCAGATGACTTGGATTAGAGGTGGTCCTAAATGTTTGGATGCCGATAATATTACTGAAGCCATTGATAATAGTTTGTCGCGGATGCAAATGGATTATATTGATCTTTATCAAATTCATTGGCCTGATCGTTATGTTCCAATGTTTGGAGAAACTGAGTATGACCCGGTCCAACAATATGCTTCAATTAGTATAGATGAACAACTTGAAGCTCTCAGTGCAGCTGTGAAAGCTGGGAAGATCAGATTTGTTGGTCTTAGTAATGAAACACCTTATGGCTTGATGAAGTTTATTCAGGTTGCTGAAAAATATGCTTCACACCTGAAGATAGTATCATTGCAGAATTCATATAGCCTGCTGTGTAGAACTTTTGATTCTGCAATGGCCGAATGCTGCCATCATGAGAGAATTAGTTTGTTGGCCTACAGTCCCCTAGCAATGGGTATACTTTCAGGGAAATATTTTTCCCCAGGCGGTGGTCCAACAGATGCTCGTTTAAATCTTTTTAAAGGGAAGTATTCAGAAGGAGAATCTAGGTACAACTTGTCCAATAAAATTATAAAGGCAGCTACCGTGCTTTTGTTTTGCGACACCCCCTTGTTGCTAGTGCTGTTTTTGGGGCCACCAAATCATGGCAGCTTCGGGAGGTTCTAAATGCATGCAAGATTGAGCTCACATTTGAAGTAATTGAAGAAATTAACAAGATTCATTCAAGGTTTCCAAATCCATGTCCCTGAAGAATGCAAATTATTAATTAATAATTATGATGAATATGTTTGAAAATTAGGTGAAAAATTACTTTTGAAGAAAAAAATTACTTTTTAAAAGGATTAGGATTTTTCATTTTGTTTTTATTCATTAGATCTGTATTAAAATGTGTGGAACAATAATTTCAACCATAAACCAAACATGGACCATCTCATTATCATATAGAGGCAGAGAAGATAGCAGTAGTCAATAGTCATAACTCGGTAAATTCGTAATACATTATACAATACTCAATGCGCGACCCGA

Coding sequences of Glyma05g29830

Limit To All Plant Sequences

>Glyma05g29830.1   sequence type=CDS   gene model=Glyma05g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTTCCTCTCTTCAATCTCGCTCCTAATCTCACTGTCTCGAGGCTCTGCTTAGGAACCATGACTTTCGGGGAGCAGAACACGCTGGCGGAGTCGTTTCAGCTTCTGGACCAAGCCTTCCATGCCGGCATCAACTTCTTCGACTCCGCCGAAATGTATCCTGTGCCTCAGCGCCCTCGCACGTGCGGCAGGAGCGAAGAGTATCTCGGCCGTTGGATTTCACAACGAAAAATCCCCAGGGATAGCCTCGTAATTGCATCTAAGGTTGCTGGACCTTCTGGGCAGATGACTTGGATTAGAGGTGGTCCTAAATGTTTGGATGCCGATAATATTACTGAAGCCATTGATAATAGTTTGTCGCGGATGCAAATGGATTATATTGATCTTTATCAAATTCATTGGCCTGATCGTTATGTTCCAATGTTTGGAGAAACTGAGTATGACCCGGTCCAACAATATGCTTCAATTAGTATAGATGAACAACTTGAAGCTCTCAGTGCAGCTGTGAAAGCTGGGAAGATCAGATTTGTTGGTCTTAGTAATGAAACACCTTATGGCTTGATGAAGTTTATTCAGGTTGCTGAAAAATATGCTTCACACCTGAAGATAGTATCATTGCAGAATTCATATAGCCTGCTGTGTAGAACTTTTGATTCTGCAATGGCCGAATGCTGCCATCATGAGAGAATTAGTTTGTTGGCCTACAGTCCCCTAGCAATGGGTATACTTTCAGGGAAATATTTTTCCCCAGGCGGTGGTCCAACAGATGCTCGTTTAAATCTTTTTAAAGGGAAGTATTCAGAAGGAGAATCTAGGTACAACTTGTCCAATAAAATTATAAAGGCAGCTACCGTGAAATACCTTAATATTGCAAAAACACATGGTCTTCATCCTGTATCTCTGGCTATAGCTTTTGTTTTGCGACACCCCCTTGTTGCTAGTGCTGTTTTTGGGGCCACCAAATCATGGCAGCTTCGGGAGGTTCTAAATGCATGCAAGATTGAGCTCACATTTGAAGTAATTGAAGAAATTAACAAGATTCATTCAAGGTTTCCAAATCCATGTCCCTGA

>Glyma05g29830.2   sequence type=CDS   gene model=Glyma05g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTTCCTCTCTTCAATCTCGCTCCTAATCTCACTGTCTCGAGGCTCTGCTTAGGAACCATGACTTTCGGGGAGCAGAACACGCTGGCGGAGTCGTTTCAGCTTCTGGACCAAGCCTTCCATGCCGGCATCAACTTCTTCGACTCCGCCGAAATGTATCCTGTGCCTCAGCGCCCTCGCACGTGCGGCAGGAGCGAAGAGTATCTCGGCCGTTGGATTTCACAACGAAAAATCCCCAGGGATAGCCTCGTAATTGCATCTAAGGTTGCTGGACCTTCTGGGCAGATGACTTGGATTAGAGGTGGTCCTAAATGTTTGGATGCCGATAATATTACTGAAGCCATTGATAATAGTTTGTCGCGGATGCAAATGGATTATATTGATCTTTATCAAATTCATTGGCCTGATCGTTATGTTCCAATGTTTGGAGAAACTGAGTATGACCCGGTCCAACAATATGCTTCAATTAGTATAGATGAACAACTTGAAGCTCTCAGTGCAGCTGTGAAAGCTGGGAAGATCAGATTTGTTGGTCTTAGTAATGAAACACCTTATGGCTTGATGAAGTTTATTCAGGTTGCTGAAAAATATGCTTCACACCTGAAGATAGTATCATTGCAGAATTCATATAGCCTGCTGTGTAGAACTTTTGATTCTGCAATGGCCGAATGCTGCCATCATGAGAGAATTAGTTTGTTGGCCTACAGTCCCCTAGCAATGGGTATACTTTCAGGGAAATATTTTTCCCCAGGCGGTGGTCCAACAGATGCTCGTTTAAATCTTTTTAAAGGGAAGTATTCAGAAGGAGAATCTAGGTACAACTTGTCCAATAAAATTATAAAGGCAGCTACCGTGCTTTTGTTTTGCGACACCCCCTTGTTGCTAGTGCTGTTTTTGGGGCCACCAAATCATGGCAGCTTCGGGAGGTTCTAA

Predicted protein sequences of Glyma05g29830

Limit To All Plant Sequences

>Glyma05g29830.1   sequence type=predicted peptide   gene model=Glyma05g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVPLFNLAPNLTVSRLCLGTMTFGEQNTLAESFQLLDQAFHAGINFFDSAEMYPVPQRPRTCGRSEEYLGRWISQRKIPRDSLVIASKVAGPSGQMTWIRGGPKCLDADNITEAIDNSLSRMQMDYIDLYQIHWPDRYVPMFGETEYDPVQQYASISIDEQLEALSAAVKAGKIRFVGLSNETPYGLMKFIQVAEKYASHLKIVSLQNSYSLLCRTFDSAMAECCHHERISLLAYSPLAMGILSGKYFSPGGGPTDARLNLFKGKYSEGESRYNLSNKIIKAATVKYLNIAKTHGLHPVSLAIAFVLRHPLVASAVFGATKSWQLREVLNACKIELTFEVIEEINKIHSRFPNPCP*

>Glyma05g29830.2   sequence type=predicted peptide   gene model=Glyma05g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVPLFNLAPNLTVSRLCLGTMTFGEQNTLAESFQLLDQAFHAGINFFDSAEMYPVPQRPRTCGRSEEYLGRWISQRKIPRDSLVIASKVAGPSGQMTWIRGGPKCLDADNITEAIDNSLSRMQMDYIDLYQIHWPDRYVPMFGETEYDPVQQYASISIDEQLEALSAAVKAGKIRFVGLSNETPYGLMKFIQVAEKYASHLKIVSLQNSYSLLCRTFDSAMAECCHHERISLLAYSPLAMGILSGKYFSPGGGPTDARLNLFKGKYSEGESRYNLSNKIIKAATVLLFCDTPLLLVLFLGPPNHGSFGRF*

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