Report for Sequence Feature Glyma05g29790
Feature Type: gene_model
Chromosome: Gm05
Start: 35290945
stop: 35292699
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g29790
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G29380 AT
Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr1:10284209-10285671 FORWARD LENGTH=315
SoyBase E_val: 2.00E-36 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR16631 Panther
GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED
JGI ISS
PF07983 PFAM
X8 domain
JGI ISS
UniRef100_G7K3C6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase-like protein n=1 Tax=Medicago truncatula RepID=G7K3C6_MEDTR
SoyBase E_val: 2.00E-40 ISS
UniRef100_UPI000233A0C8 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A0C8 related cluster n=1 Tax=unknown RepID=UPI000233A0C8
SoyBase E_val: 1.00E-169 ISS
Expression Patterns of Glyma05g29790
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g29790
Paralog Evidence Comments
Glyma08g12910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g29790 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g164900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g29790
Coding sequences of Glyma05g29790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g29790.2 sequence type=CDS gene model=Glyma05g29790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTACAGATGATTGTTGCAAGTCTAGGAACAACCAAAATATTAACAAATGACAAAAAACAGGAAATCTTCTCATCATCGGAATTGGGTACTCAATTAGATGATGTCCCTATCGTGGGAAACCCTAACACTCCTCCTCAAACACCTGACACATCAGGGCAAAACCCCACGGCCCCAAACACAAATCCAACAACCCCAACCACAACACCAACATCATCAGGTGGTCAATGGTGTGTTGCTAAACAGGGAGCTTCGGACGCTGATCTACAGGTTGCTCTTGACTATGCTTGTGGGATTGGACGTGCAGACTGCTCAGCAATACAACCAGGAGCAAGCTGCTATAATCCGAACACTGTCCGTGATCATGCTTCCTATGCATTCAATAACTACTACCAGAAGAATCCAATACCTAACAGCTGTGTATTTGGAGGAACAGCATCCCTTACAAGCAATGATCCAAGTTACAAGGATTGCAAATACGCATCACCCAAGTCAACAAGCACAAATCAACCACCACAAGCACCAACAGTTATCAGCCCACCAAGTGCACCAACAGTTGTCAGCCCACCGAGTCCGCCATTATTTGTCAGTCCACCAACTCCACCAGGCACGCTAAATCCCGGTGGCGGATCAAATGTCTTTGGTTCAGAACCAAAAGGAAACCCTAACACAGCCACATCTGCATTTTATTCCCTGCTGCTGTTGTTCACATGTGGCCTGTTGGCTTCCCTTCAACTAGCAAATTACATCTAA
Predicted protein sequences of Glyma05g29790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g29790.2 sequence type=predicted peptide gene model=Glyma05g29790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
LQMIVASLGTTKILTNDKKQEIFSSSELGTQLDDVPIVGNPNTPPQTPDTSGQNPTAPNTNPTTPTTTPTSSGGQWCVAKQGASDADLQVALDYACGIGRADCSAIQPGASCYNPNTVRDHASYAFNNYYQKNPIPNSCVFGGTASLTSNDPSYKDCKYASPKSTSTNQPPQAPTVISPPSAPTVVSPPSPPLFVSPPTPPGTLNPGGGSNVFGSEPKGNPNTATSAFYSLLLLFTCGLLASLQLANYI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
