SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25737 | AT | Annotation by Michelle Graham. TAIR10: Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476 | SoyBase | E_val: 3.00E-174 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| PTHR14255 | Panther | ATP-DEPENDENT PROTEASE (CEREBLON) | JGI | ISS | |
| PF01925 | PFAM | Sulfite exporter TauE/SafE | JGI | ISS | |
| UniRef100_Q6EQH5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6EQH5_ORYSJ | SoyBase | E_val: 4.00E-166 | ISS |
| UniRef100_UPI000233A0C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A0C7 related cluster n=1 Tax=unknown RepID=UPI000233A0C7 | SoyBase | E_val: 0 | ISS |
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Glyma05g29780 not represented in the dataset |
Glyma05g29780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g12890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g164800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29780.2 sequence type=transcript gene model=Glyma05g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGTTTTTTTCAATAATTAATGCATAAGGGTTCCATGATCTATAGTATGAGAAAATATATAGACCATTCCTGTTAACATCAATATACCCTAACTCCAGATTTCTCCTTCTTACTCCTAAAATTTTGATTGAATTCAGTCTCGTAGCACCATCAACAATTGCTAAGTTGCTCTCAAGTGAGGAATTTGAAAATTTCTATGCATGGTTTTTGGTTGTGTCGGTCTCATCTTGAAGCAACATATAGGAAAGTCATAGCTAGTACTAAAGGGACTTTATTGATTGGGTTTTGAAAACTGCTCTTTATCTAAAGAGCAGTACATATGGCTGTGCATGGATCGAAAAGGTGGGGTGTGAAATGGGTTGCTGAAAGGGTTCTTCTGGTAGCTTTTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCATCAAAACACAGAACAGAAACCAGTCTCATCACCATCCAATGATACGAAAGGGGTTGATACTAATGGCCATCATGCTAATGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGGTCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCTATGCTTACCCTCATTATTGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACCGGTGGAGCAGGAGCAACTGTTTTCTACAATTTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTGTTGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACGGCTTTGTTAATAATAGTTTTCATAGGCCTTTCAGTCAATGCATTCTTTAAGGGTGTCAAAACATGGAAAAAAGAAACCATTATTAAGAAGGAAGCTAGGCAGAATGTACGGTTAAATTATACAGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGTCAATGAAAGCCATACAAATACCAACCAATCAAGGAAAAAAGTAGTTTCTGTTATTGAAAACATTTACTGGAAGGAACTTGGAATTCTTGTATCTGTCTGGATCTTGATACTTGCATTACAGATAGGAAAAAATTACACTACAAATTGCTCTGCGTTATATTGGATAATGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTTTTTATGAAGCCGTGCTTCTATACAAAGGTCAGAGAGTGATAGCATCAAAGGGTGATCAACAAACACGTTGGCGTGTACAACAATTGATTCTATATTGCTCGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCATCCTCAGGTGTCAAGTGCTACTTCCACTTTTGCGATGACATTTTCTGCATCTATGTCTGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCTCTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATCTTCATCCTCGCACTCACAGTTTTTGTGAGCGGAATTTCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAGAACCTTTGCTCGTACAGGGTTAGAAATTAAAGATGGAGATGTGTAGTTTCTAAGTGCAGTTTTGTGCTTTCAGAGGTTGTATTAAGAAATGTATCTTTTTTCTTAACCGGAATTAGTTTACCTGATTGATTATTCAGTAAAATTCTATGACTATTTTAAAGCTGCATTAACATTTAAGCTTAAATTATAATTCACACACGTTTATATATGAGTTTTGATATCTATGACTATTC
>Glyma05g29780.1 sequence type=CDS gene model=Glyma05g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTGCATGGATCGAAAAGGTGGGGTGTGAAATGGGTTGCTGAAAGGGTTCTTCTGGTAGCTTTTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCATCAAAACACAGAACAGAAACCAGTCTCATCACCATCCAATGATACGAAAGGGGTTGATACTAATGGCCATCATGCTAATGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGGTCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCTATGCTTACCCTCATTATTGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACCGGTGGAGCAGGAGCAACTGTTTTCTACAATTTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTGTTGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACGGCTTTGTTAATAATAGTTTTCATAGGCCTTTCAGTCAATGCATTCTTTAAGGGTGTCAAAACATGGAAAAAAGAAACCATTATTAAGAAGGAAGCTAGGCAGAATGTACGGTTAAATTATACAGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGTCAATGAAAGCCATACAAATACCAACCAATCAAGGAAAAAAGTTTCTGTTATTGAAAACATTTACTGGAAGGAACTTGGAATTCTTGTATCTGTCTGGATCTTGATACTTGCATTACAGATAGGAAAAAATTACACTACAAATTGCTCTGCGTTATATTGGATAATGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTTTTTATGAAGCCGTGCTTCTATACAAAGGTCAGAGAGTGATAGCATCAAAGGGTGATCAACAAACACGTTGGCGTGTACAACAATTGATTCTATATTGCTCGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCATCCTCAGGTGTCAAGTGCTACTTCCACTTTTGCGATGACATTTTCTGCATCTATGTCTGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCTCTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATCTTCATCCTCGCACTCACAGTTTTTGTGAGCGGAATTTCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAGAACCTTTGCTCGTACAGGGTTAGAAATTAA >Glyma05g29780.2 sequence type=CDS gene model=Glyma05g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTGCATGGATCGAAAAGGTGGGGTGTGAAATGGGTTGCTGAAAGGGTTCTTCTGGTAGCTTTTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCATCAAAACACAGAACAGAAACCAGTCTCATCACCATCCAATGATACGAAAGGGGTTGATACTAATGGCCATCATGCTAATGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGGTCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCTATGCTTACCCTCATTATTGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACCGGTGGAGCAGGAGCAACTGTTTTCTACAATTTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTGTTGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACGGCTTTGTTAATAATAGTTTTCATAGGCCTTTCAGTCAATGCATTCTTTAAGGGTGTCAAAACATGGAAAAAAGAAACCATTATTAAGAAGGAAGCTAGGCAGAATGTACGGTTAAATTATACAGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGTCAATGAAAGCCATACAAATACCAACCAATCAAGGAAAAAAGTAGTTTCTGTTATTGAAAACATTTACTGGAAGGAACTTGGAATTCTTGTATCTGTCTGGATCTTGATACTTGCATTACAGATAGGAAAAAATTACACTACAAATTGCTCTGCGTTATATTGGATAATGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTTTTTATGAAGCCGTGCTTCTATACAAAGGTCAGAGAGTGATAGCATCAAAGGGTGATCAACAAACACGTTGGCGTGTACAACAATTGATTCTATATTGCTCGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCATCCTCAGGTGTCAAGTGCTACTTCCACTTTTGCGATGACATTTTCTGCATCTATGTCTGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCTCTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATCTTCATCCTCGCACTCACAGTTTTTGTGAGCGGAATTTCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAGAACCTTTGCTCGTACAGGGTTAGAAATTAA
>Glyma05g29780.1 sequence type=predicted peptide gene model=Glyma05g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVHGSKRWGVKWVAERVLLVAFFLLVSVYVASSHQNTEQKPVSSPSNDTKGVDTNGHHANGFYKHTWPEMKFGWKIIVGSIIGFLGSAFGTVGGVGGGGIFVPMLTLIIGFDARSATAISKCMITGGAGATVFYNLKQRHPTLDMPVIDYDLALLFQPMLMLGISVGVAFNVIFPDWMLTALLIIVFIGLSVNAFFKGVKTWKKETIIKKEARQNVRLNYTERTGNAAHPQTEETVNESHTNTNQSRKKVSVIENIYWKELGILVSVWILILALQIGKNYTTNCSALYWIMNLLQVPITVGTTFYEAVLLYKGQRVIASKGDQQTRWRVQQLILYCSCGIIAGIIGGLLGLGGGFILGPLFIGLGIHPQVSSATSTFAMTFSASMSVVEYYLLKRFPIPYALYFVAVATAAALVGQHLVRKVIAILGRTSLIIFILALTVFVSGISLGGVGIAKLIEKKVQMKFENLCSYRVRN* >Glyma05g29780.2 sequence type=predicted peptide gene model=Glyma05g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVHGSKRWGVKWVAERVLLVAFFLLVSVYVASSHQNTEQKPVSSPSNDTKGVDTNGHHANGFYKHTWPEMKFGWKIIVGSIIGFLGSAFGTVGGVGGGGIFVPMLTLIIGFDARSATAISKCMITGGAGATVFYNLKQRHPTLDMPVIDYDLALLFQPMLMLGISVGVAFNVIFPDWMLTALLIIVFIGLSVNAFFKGVKTWKKETIIKKEARQNVRLNYTERTGNAAHPQTEETVNESHTNTNQSRKKVVSVIENIYWKELGILVSVWILILALQIGKNYTTNCSALYWIMNLLQVPITVGTTFYEAVLLYKGQRVIASKGDQQTRWRVQQLILYCSCGIIAGIIGGLLGLGGGFILGPLFIGLGIHPQVSSATSTFAMTFSASMSVVEYYLLKRFPIPYALYFVAVATAAALVGQHLVRKVIAILGRTSLIIFILALTVFVSGISLGGVGIAKLIEKKVQMKFENLCSYRVRN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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