Report for Sequence Feature Glyma05g29720
Feature Type: gene_model
Chromosome: Gm05
Start: 35248152
stop: 35249596
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g29720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G46530 AT
Annotation by Michelle Graham. TAIR10: AWPM-19-like family protein | chr5:18875576-18876779 FORWARD LENGTH=157
SoyBase E_val: 5.00E-79 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05512 PFAM
AWPM-19-like family
JGI ISS
UniRef100_A5Y734 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AWPM19-like protein n=1 Tax=Cucumis melo RepID=A5Y734_CUCME
SoyBase E_val: 4.00E-81 ISS
UniRef100_C6T477 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T477_SOYBN
SoyBase E_val: 4.00E-112 ISS
Expression Patterns of Glyma05g29720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g29720
Paralog Evidence Comments
Glyma08g12830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g29720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g164300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g29720
Transcripts of Glyma05g29720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g29720.3 sequence type=transcript gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGAATATGACTTGCCTCAGAGAACAAACAATTGACAACTCCTAAGAAGTTGCCTGTGGGGAAGGCCTGCATGGAGCTTTTTAGCTAACTAGCAGCCTTGTCAAGAAAAGAACCCAACCTTCTGTTTTATCCATTTCTCATATAGATAAGAACTCTCATTTGTACCAAAGATATGCACCTCCTGGTCCTTGGATTTATAGACTTCCCTTCACTGCTTTTTAGGTTCCTGAAATCCCCTAGTACTTTTCTTGTTCAAAACAGCTTTTTCCTTATCCAAAAAACAAACAGCAACACAGATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGAAGGTTGAAGGAATTTTTTTTTTGTTGGCCAAGAAGGATTGTATTGGTGTGCTTGTATTTTTCTCTCCCTCTCTTGCTTTTTTTTTTTCTCTTTGGTTTATGTATTTTTTCTGTCGGTCCAATCAAGACTTTTAATTCATATAAGTTAAAGGAGAATTAGCATTGTGGTGTGATTTGAATGATTGGAATTTGGATTTGTATGAATCAAGAATGTCATTTACAAGAGCAATAAAGGAGAACACTATCTTTACTTTTC
>Glyma05g29720.4 sequence type=transcript gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGAATATGACTTGCCTCAGAGAACAAACAATTGACAACTCCTAAGAAGTTGCCTGTGGGGAAGCTTTTTCCTTATCCAAAAAACAAACAGCAACACAGATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGAAGGTTGAAGGAATTTTTTTTTTGTTGGCCAAGAAGGATTGTATTGGTGTGCTTGTATTTTTCTCTCCCTCTCTTGCTTTTTTTTTTTCTCTTTGGTTTATGTATTTTTTCTGTCGGTCCAATCAAGACTTTTAATTCATATAAGTTAAAGGAGAATTAGCATTGTGGTGTGATTTGAATGATTGGAATTTGGATTTGTATGAATCAAGAATGTCATTTACAAGAGCAATAAAGGAGAACACTATCTTTACTTTTC
Coding sequences of Glyma05g29720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g29720.2 sequence type=CDS gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGA
>Glyma05g29720.3 sequence type=CDS gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGA
>Glyma05g29720.4 sequence type=CDS gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGA
Predicted protein sequences of Glyma05g29720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g29720.2 sequence type=predicted peptide gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKEQMKPIATLLLGLNFCMYAIVLGIGGWAMNRAIDHGFIIGPELKLPAHFSPLFFPMGNASTGFFVTFALLAGVVGAASAISGINHIQSWTAESLPSAASVATMAWTLTLLAMGFAWKEIELRIRNARLKTMEAFIIILSATQLFYIVAIHSAAAYRRKT*
>Glyma05g29720.3 sequence type=predicted peptide gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKEQMKPIATLLLGLNFCMYAIVLGIGGWAMNRAIDHGFIIGPELKLPAHFSPLFFPMGNASTGFFVTFALLAGVVGAASAISGINHIQSWTAESLPSAASVATMAWTLTLLAMGFAWKEIELRIRNARLKTMEAFIIILSATQLFYIVAIHSAAAYRRKT*
>Glyma05g29720.4 sequence type=predicted peptide gene model=Glyma05g29720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKEQMKPIATLLLGLNFCMYAIVLGIGGWAMNRAIDHGFIIGPELKLPAHFSPLFFPMGNASTGFFVTFALLAGVVGAASAISGINHIQSWTAESLPSAASVATMAWTLTLLAMGFAWKEIELRIRNARLKTMEAFIIILSATQLFYIVAIHSAAAYRRKT*