SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18060 | AT | Annotation by Michelle Graham. TAIR10: SH3 domain-containing protein | chr4:10027668-10029662 REVERSE LENGTH=351 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
| KOG1118 | KOG | Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation | JGI | ISS | |
| PTHR22820 | Panther | SH2 DOMAIN ADAPTOR PROTEIN | JGI | ISS | |
| PTHR22820:SF9 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00018 | PFAM | SH3 domain | JGI | ISS | |
| UniRef100_G7L808 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rho guanine nucleotide exchange factor n=1 Tax=Medicago truncatula RepID=G7L808_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K448 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K448_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g29700 not represented in the dataset |
Glyma05g29700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g12810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g164100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29700.2 sequence type=transcript gene model=Glyma05g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATGGTTTATTCTTATTACATATTACACATACGGTTTTGGGATTTACAGAAGAAAAAAGAGGGGAAAAGAGTGACATAATTCAAGTTGACAACGTTGAGCTGAGCTGGGGTTCTCAGATAACATTCGTTGGATCTGATTTCATACTTTGTTTGTTGTCTGTCTTTTATATTCTGAGAACTAAGAACAGAGAGCTGAAAGAAACTGCCATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGGTCATCGATGAGGTCGAAATGCAGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCTCGCCATCTTGCTCAACGATATAGTCGGATGAGACAAGAAGCAGAGGCACAAAGAGAGGAGATTGCTAGAAGACAAGCACGGGTTCGGGAAGCTCCAACTGCTGAACAGGTTGCCAAACTGCATGCTGCGGAAGCAAGGATGCAGGAGCTGAAAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCAGCAGCATTGGCTGCTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCTGAGAATGGCACAGAGAAAACAATGTACTTCTTGGCTGAAGCAACGCATCCCTTCAGTGGTGAATCAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATATGGCTGGTGAAGTTTACTAGGTTCTACTCATCTTGTGCTATTCATTCTTTGTTCGTTTCCCATATTTGGTTTTGCACTGCACTGCTCAAAGAGGATAAGAAAAAGGGGTGTAGAGGATAGTGGAATTGATGGAAGTGTTACCCCAAAATGAAGAAAAAGGAAAAAAGGGGTGTTATATACATGTGGTCTGTCGTTGCTCAAGGGTGACACTTGACACTGGCTTTGCAGACAGTTTTTCCATTATTATTTTTTTTTTTTTACTTTGCGGCCACAGACACGGTTTTACTTTTATCTTTTGTATTGTAATTGATTGATTGGAATACATGTGTCTTTGTTGATGATCATTTCATGTTTGTGGTAGTACATATTGGAAGAATGAAGGATGATAAGATTTAAATTTGTACAATCCCAATGTAGCCCTATAGGTCATTAGGTCCAATGGAAAGAGATATCTGATTTTCTAGTAACTGAGGATCGTGATCCGCAAGACAGAACTAATGGAACTGGGCCATGTATTACCCTAAAGTGAGATCATGTTCTTTTGGGGACTGTTTGATCAAGTTTTATACTTAGTTGTAGAGTACACTTTACTTTTAAATGGAGTTTTTTTTTTTTTTTTGGGTGATTATGATTATCAGTATTTGAGATTATATTGCATTTTGAATAATTCGAGTTCAGTGGCACGGATTCATTTAAGGAGGTAAAGTTGTTCTAGTGCTT
>Glyma05g29700.1 sequence type=CDS gene model=Glyma05g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGGTCATCGATGAGGTCGAAATGCAGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGGTGGACTTTTCATATGTTGTTCAGGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCTCGCCATCTTGCTCAACGATATAGTCGGATGAGACAAGAAGCAGAGGCACAAAGAGAGGAGATTGCTAGAAGACAAGCACGGGTTCGGGAAGCTCCAACTGCTGAACAGGTTGCCAAACTGCATGCTGCGGAAGCAAGGATGCAGGAGCTGAAAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCAGCAGCATTGGCTGCTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCTGAGAATGGCACAGAGAAAACAATGTACTTCTTGGCTGAAGCAACGCATCCCTTCAGTGGTGAATCAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATATGGCTGGTGAAGTTTACTAG >Glyma05g29700.2 sequence type=CDS gene model=Glyma05g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGGTCATCGATGAGGTCGAAATGCAGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCTCGCCATCTTGCTCAACGATATAGTCGGATGAGACAAGAAGCAGAGGCACAAAGAGAGGAGATTGCTAGAAGACAAGCACGGGTTCGGGAAGCTCCAACTGCTGAACAGGTTGCCAAACTGCATGCTGCGGAAGCAAGGATGCAGGAGCTGAAAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCAGCAGCATTGGCTGCTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGATGGTCTCAGATAGACAGAAGAAAGAATCTGCCCCTCCAGTAGGTATTTCTGAGAATGGCACAGAGAAAACAATGTACTTCTTGGCTGAAGCAACGCATCCCTTCAGTGGTGAATCAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATATGGCTGGTGAAGTTTACTAG
>Glyma05g29700.1 sequence type=predicted peptide gene model=Glyma05g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDALRKQASKLREQVAKQQQAVIKQFSSSGYESSDVVVIDEVEMQRHHQLEKLYRATRAGKDFQKEIVKAAETFTAIGYKHIETGTKLSEDCCKYGAENNSDNILSKAASVYGDARKHVEKEHEELNRLLSTQVDFSYVVQVLDPLRQMINGVPLEDARHLAQRYSRMRQEAEAQREEIARRQARVREAPTAEQVAKLHAAEARMQELKANMAVLGKEAAAALAAVEAQQQRLTFQRLVAMVEGEKTFHLRVAAILGEIEAEMVSDRQKKESAPPVGISENGTEKTMYFLAEATHPFSGESEKELSFSKGDFVVVRKVSQSGWSEGECNGKAGWFPSAYVEKRQRIPSSNMAGEVY* >Glyma05g29700.2 sequence type=predicted peptide gene model=Glyma05g29700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDALRKQASKLREQVAKQQQAVIKQFSSSGYESSDVVVIDEVEMQRHHQLEKLYRATRAGKDFQKEIVKAAETFTAIGYKHIETGTKLSEDCCKYGAENNSDNILSKAASVYGDARKHVEKEHEELNRLLSTQVLDPLRQMINGVPLEDARHLAQRYSRMRQEAEAQREEIARRQARVREAPTAEQVAKLHAAEARMQELKANMAVLGKEAAAALAAVEAQQQRLTFQRLVAMVEGEKTFHLRVAAILGEIEAEMVSDRQKKESAPPVGISENGTEKTMYFLAEATHPFSGESEKELSFSKGDFVVVRKVSQSGWSEGECNGKAGWFPSAYVEKRQRIPSSNMAGEVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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