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Report for Sequence Feature Glyma05g29580

Feature Type:gene_model
Chromosome:Gm05
Start:35152572
stop:35154047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g29580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18930AT Annotation by Michelle Graham. TAIR10: RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370797-10371885 FORWARD LENGTH=181 SoyBaseE_val: 3.00E-67ISS
GO:0006388GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0016070GO-bp Annotation by Michelle Graham. GO Biological Process: RNA metabolic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004112GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclic-nucleotide phosphodiesterase activity SoyBaseN/AISS
PF07823PFAM Cyclic phosphodiesterase-like protein JGI ISS
UniRef100_G7L7Z2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclic phosphodiesterase n=1 Tax=Medicago truncatula RepID=G7L7Z2_MEDTR SoyBaseE_val: 1.00E-100ISS
UniRef100_I1K441UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K441_SOYBN SoyBaseE_val: 3.00E-132ISS

Expression Patterns of Glyma05g29580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g29580 not represented in the dataset
Glyma05g29580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g29580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g163100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g29580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g29580
>Glyma05g29580.1   sequence type=CDS   gene model=Glyma05g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACCAGGCAGTGTATTCGGTGTGGGCGATTCCACCGGAAGACGTGGGCGCCAGATGCGCTAACCTCATGACCGCCCTCCGATCCGAGTTCGGCGGGCCCCACTTCCACCCCCACATCACCGTCGTCGGAGCCATCAAACTCACCCCGGAAGACGCCGTGACCAAGCTCCGATCGGCGTGCCAAGCCCTGAGGCCCTTCCACGTCACCGTGGACCGCGTGGCCGCCGGCAGCTTCTTCTACCAGTGCGTGTATCTCCTCCTCCGCCCCGACCCTCACCTCCTCGAAACCAGCGCACACTGCTGCACCCACTTCGGTTACACCAATTCCACTCCTTACATGCCACACTTGAGTCTTCTATACGGAGATTTGAGCGATGAAGAGAAGCGGAAGGCGCAAGAGAGGGCTAATGCTATCGATGACACGCTCGGTGGCTTGACCTTTCAGATTACGCGCCTTGCCTTATACAAAACGGACACTGAAGACAAAACGCTCAAATCTTGGGAGAAAATTGCTGAATGCACTCTCACTCCAAATTAG
Predicted protein sequences of Glyma05g29580
>Glyma05g29580.1   sequence type=predicted peptide   gene model=Glyma05g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANQAVYSVWAIPPEDVGARCANLMTALRSEFGGPHFHPHITVVGAIKLTPEDAVTKLRSACQALRPFHVTVDRVAAGSFFYQCVYLLLRPDPHLLETSAHCCTHFGYTNSTPYMPHLSLLYGDLSDEEKRKAQERANAIDDTLGGLTFQITRLALYKTDTEDKTLKSWEKIAECTLTPN*






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