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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29760 | AT | Annotation by Michelle Graham. TAIR10: Putative adipose-regulatory protein (Seipin) | chr1:10422381-10424116 FORWARD LENGTH=526 | SoyBase | E_val: 5.00E-129 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4200 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21212 | Panther | BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG (BSCL2 PROTEIN) | JGI | ISS | |
| PF06775 | PFAM | Putative adipose-regulatory protein (Seipin) | JGI | ISS | |
| UniRef100_G7ILL4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Seipin n=1 Tax=Medicago truncatula RepID=G7ILL4_MEDTR | SoyBase | E_val: 8.00E-168 | ISS |
| UniRef100_UPI0002339F56 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339F56 related cluster n=1 Tax=unknown RepID=UPI0002339F56 | SoyBase | E_val: 0 | ISS |
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Glyma05g29521 not represented in the dataset |
Glyma05g29521 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g162700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29521.1 sequence type=CDS gene model=Glyma05g29521 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCATCTTTTTCAGGCCCAAACAACCAAAACGACGACGTTTTCCTCGACGCGCTTCCTCACTGCCCCTTCCACCATTGCTCCGGCGCCGCCGATAAATCGCCGGAATCTTCCTCCTCTTCTTCAATTCTCTCCGACCCCAACCCACCCTCCCCACCTCCGGCAACCACAATCCGCCGCCGTTCAACCCGCCGTAACTCACCGGTTAGGGAGACCACGAATACCGGTTCCAGCCACAATTCGACCACCGGAAACGTCACGAACCTTCGGAGCGATCGAAATCTCGGAACTTCAAACGGAAATGAGAATTTCCCCGAGAAATGCGATTCAAATCGAGAGAAAGTTCGTCCCTTTCAATCTCCAAGCGTTGGCACCGAAGAGGGGAACGAGGAATCGACGTTAACCACCGCCGAGAACGAAGACGGCGTCACCGATTCCGCTGACTCGGCGGTGGAATTCAGTAATTCCCCTTTGAATTCGCTCGATTATGTAACGGGGTTGGTGATTAGATCAATTGTGTTTCAAATCAATATTTTCGTTGTCTTAATGAAATTCCCAGTGTGGTTTATGTTACATGTTTTTTTGTTTTTCGTGGACCCTTTTGGAACAATCAGTAAGGGGAAAGGTCTTTTGGTGGTGATTTTGGGTAAATTTTGGTGTTTTGTTTTTCGGTGCATTGATCCTTCAGCTCAAGGGTGGTTCAAAGAGCACAAATCCTTGTGGAATGTTGCATTTAGGTGTGGGTGGGGATTCTTGAGGTCAATGTATATTTGTTGCATTTTGTTTGGTCTTTTGGTTTCTTCACTTGTGGTGAGTGGGTTTTTGGTGAGGTGGTTGGTGGAGGAGCCGTTTCAGATGAGGCAGGTTTTGAATTTTGATTACACCAAGCAGAGTCCTGTTGCATTTGTACCTGTGATGTCTTGTGATGGTGTTGGGGGTGCGCATGATTCTGAGAAGGGCATTGCTGTTAGAGAGTGGATGGGTAGAAGGGTTATACCTGCTAACCAAAAGGTGCAGGTCACTGTTTCATTGGTTGTGCCAGAGTCAGAATACAACACAAATCTTGGCATCTTTCAGATCAGGGTAGACTTCTTGTCTTCTGATGGCAAAACAATTTGGAGTTCAAACCAACCTTGCATGTTGAAATTCACAAGTGAGCCTATCCGCCTAATCACGACATTCCTCAAGATTGTACCTCTTGTCACTGGCTATATATCAGAAACCCAGACACTGAATGTCAAGATGAGAGGTTTTGTTGAAGGGGATGTACCTACTTCATGCTTAAAAGTAACCCTTGAGCAGCGAGCAGAATATTCACCTGGTGCCGGCATTCCTCAAATGTATGATTCATCAGTGGTTATTGAATCAGAACTTCCCTTATTCAAGAGGATTATATGGCATGGGAAGATTTGCATATTTTTATGGATCACAATGATGGCTTTCATGATGGAGTTACTACTCGTTCTAGTGTGTTGTTTGCCTATAATTATTCCAAGAACCAGGCAAAGCAGTGGTGCTGCTCGTGTTACCGGTACCCAAAATAATCTTCAGGCACCAAATTAA
>Glyma05g29521.1 sequence type=predicted peptide gene model=Glyma05g29521 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSFSGPNNQNDDVFLDALPHCPFHHCSGAADKSPESSSSSSILSDPNPPSPPPATTIRRRSTRRNSPVRETTNTGSSHNSTTGNVTNLRSDRNLGTSNGNENFPEKCDSNREKVRPFQSPSVGTEEGNEESTLTTAENEDGVTDSADSAVEFSNSPLNSLDYVTGLVIRSIVFQINIFVVLMKFPVWFMLHVFLFFVDPFGTISKGKGLLVVILGKFWCFVFRCIDPSAQGWFKEHKSLWNVAFRCGWGFLRSMYICCILFGLLVSSLVVSGFLVRWLVEEPFQMRQVLNFDYTKQSPVAFVPVMSCDGVGGAHDSEKGIAVREWMGRRVIPANQKVQVTVSLVVPESEYNTNLGIFQIRVDFLSSDGKTIWSSNQPCMLKFTSEPIRLITTFLKIVPLVTGYISETQTLNVKMRGFVEGDVPTSCLKVTLEQRAEYSPGAGIPQMYDSSVVIESELPLFKRIIWHGKICIFLWITMMAFMMELLLVLVCCLPIIIPRTRQSSGAARVTGTQNNLQAPN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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