Report for Sequence Feature Glyma05g29410
Feature Type: gene_model
Chromosome: Gm05
Start: 35041506
stop: 35047166
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g29410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G29330 AT
Annotation by Michelle Graham. TAIR10: ER lumen protein retaining receptor family protein | chr1:10258580-10260906 REVERSE LENGTH=215
SoyBase E_val: 5.00E-133 ISS
GO:0006621 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen
SoyBase N/A ISS
GO:0006914 GO-bp
Annotation by Michelle Graham. GO Biological Process: autophagy
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005801 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cis-Golgi network
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005046 GO-mf
Annotation by Michelle Graham. GO Molecular Function: KDEL sequence binding
SoyBase N/A ISS
GO:0046923 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding
SoyBase N/A ISS
KOG3106
KOG
ER lumen protein retaining receptor
JGI ISS
PTHR10585 Panther
ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED
JGI ISS
PF00810 PFAM
ER lumen protein retaining receptor
JGI ISS
UniRef100_I1K426 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=I1K426_SOYBN
SoyBase E_val: 2.00E-155 ISS
UniRef100_I1K426 UniRef
Annotation by Michelle Graham. Best UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=I1K426_SOYBN
SoyBase E_val: 2.00E-155 ISS
Expression Patterns of Glyma05g29410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g29410
Paralog Evidence Comments
Glyma08g12570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g29410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g161700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g29410
Transcripts of Glyma05g29410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g29410.2 sequence type=transcript gene model=Glyma05g29410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACGGGCTAGTCCACAGAATATTCTTGCTGGGTTTTCATTTTGTGGGACAACACTTCTTGACTCTCAGCTACCAACAAAATCTTACAACCTTTGTGATCATTTCCAAACGGAATTCCTATCAGGGATGATAAGGATCTTCTCCTTCATCTTTATCCTCTCACACAAACGCGTAGCCCTTCTCATGGAGTTGCAAGTCTGGCTTTTTCATCACACTTGCCATCACAACCTCATCAAACAGCTTGTCCCTCTGAATTCTCCTGGTGATTTTCTTCACCACGTTGCGCTTTCTCTCATTACTTGATCCATACACCCCTAGAATGTTGATATGTGGTTGCTCCAGAGCCATCATTATTTGATCCAAAATTGAGCTCATGGGTTCAGAGACCTCACAGCCATTCAAAGAGCCTGCTTGCAGTGTTTAGATACCGCACTGATTCCACCAAGTTGCAACTCCTGAGGCTCTTCACATTCGTCCTTTGCCCCATCTTGCCTTTTGTGGCACTCGTCCATTCTGCAATTGCTGCGAAACATGAGACATAGTTGTCGGGTAATTGGGTATTCCTCAAAATTTCTGAAAAAAAGAAGGAAGCGGTGAGACGAAGACGAGTGGCACCTCAGGCGTCAGCTTCTTCCTTTTCATACTGTTGTACTTTTACCAAATAAGAGAAACAAAAAACAAATCCACACACTCCATTTTCGATTCCTTTCCATTTCTCCGTTCCCCTTGGAACGTTTTCTCTCTGTGTGTCTCGATAGGGCAAAAACCATGAACATCTTCAGGCTCGCCGGTGATATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCCAGCTCCTTAGCCATTGTTTGGTGCATGCGTTTTCACCCCATGGTCAGGAGAAGTTACGATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGTTGGTTTTGTTGCAAAGGAGTGGAAATGTGGACAATTTGACTGGGCAATACATATTCTTTCTTGGTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTGTTTTGGAATTTAGACCTGTGTGACCAGTCACCGCTAAATTTTACAGAGCGTCGTGGTTTGGATGATGTTAGTTTTGAGAGTAACGAGACAAGGCTAACTCCTCTCCCTGTTCATGAGTGGGGTAAGTAAGTTTTGTTTTTAAGGTTCAAGGGTAAACAGGTTTTAACTTCTGATGAATATAACCGTCCCGTGGGTTAAAATGCAAATGTTATGTGATGATGTTTTGTATATTCACGTCTCCATTGCATATTATTGTATAGTTTGTAGTGTAAGGTAGCTGATTTTGGTTATGATACGAATGATCCCTAGCTTAGGTATGATTACACTGTAAAATTATACCATTTCTTCTTTTGGCAGAGGTGACTAAATGCAAATTCTGTCGGAATACCGTAACTTGATTGCTATTTCTATTTATAATCGCAAATTATG
Coding sequences of Glyma05g29410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g29410.1 sequence type=CDS gene model=Glyma05g29410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACATCTTCAGGCTCGCCGGTGATATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCCAGCTCCTTAGCCATTGTTTGGTGCATGCGTTTTCACCCCATGGTCAGGAGAAGTTACGATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGTTGGTTTTGTTGCAAAGGAGTGGAAATGTGGACAATTTGACTGGGCAATACATATTCTTTCTTGGTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGA
>Glyma05g29410.2 sequence type=CDS gene model=Glyma05g29410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACATCTTCAGGCTCGCCGGTGATATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCCAGCTCCTTAGCCATTGTTTGGTGCATGCGTTTTCACCCCATGGTCAGGAGAAGTTACGATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGTTGGTTTTGTTGCAAAGGAGTGGAAATGTGGACAATTTGACTGGGCAATACATATTCTTTCTTGGTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGA
Predicted protein sequences of Glyma05g29410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g29410.1 sequence type=predicted peptide gene model=Glyma05g29410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNIFRLAGDMTHLLSILVLLLKIYATKSCSGISRKTQELYAIVFVARYLDLFTDFISVYNTFMKVVFIASSLAIVWCMRFHPMVRRSYDRELDTFRHYFLVGASFALALILHEKFTVQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYIFFLGAYRAFYILNWIYRYLTEPHFTRWIACVSGVVQTALYADFFYYYFISWKNNSKLKLPA*
>Glyma05g29410.2 sequence type=predicted peptide gene model=Glyma05g29410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNIFRLAGDMTHLLSILVLLLKIYATKSCSGISRKTQELYAIVFVARYLDLFTDFISVYNTFMKVVFIASSLAIVWCMRFHPMVRRSYDRELDTFRHYFLVGASFALALILHEKFTVQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYIFFLGAYRAFYILNWIYRYLTEPHFTRWIACVSGVVQTALYADFFYYYFISWKNNSKLKLPA*