Glyma05g29310 - SoyBase

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Report for Sequence Feature Glyma05g29310

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34988297
stop:	34990342
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29280	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 65 \| chr1:10236589-10237467 FORWARD LENGTH=259	SoyBase	E_val: 4.00E-73	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015698	GO-bp	Annotation by Michelle Graham. GO Biological Process: inorganic anion transport	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_A7LHI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY48 n=1 Tax=Glycine max RepID=A7LHI5_SOYBN	SoyBase	E_val: 8.00E-170	ISS
UniRef100_I1K416	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K416_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g29310

Locus	Gene Symbol	Protein Name
	WRKY90	WRKY Transcription Factor

Expression Patterns of Glyma05g29310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29310

Paralog	Evidence	Comments
Glyma08g12460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g160800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29310

Limit To All Plant Sequences

>Glyma05g29310.1   sequence type=CDS   gene model=Glyma05g29310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGCAAGTTCAGAAAAAAGAACCGCAACGTTAACTCATATACCAGTGAACAAGATCAAGACACTGATATAGCTCAAGAAAACCTTGCCGAGTCCCCTCCTTCTTCCACTGTGTTCAACATCGATGGCTTAGTCCCCTCCCCCACTTCCTCATCAAAGAGAAGGAGGGCAATACAGAAAAGGGTGGTGCAAATCCCAATGAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAGAGCAACACCCCACCCTCGGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCCATCAAGGGTTCCCCTTATCCCAGAGGGTACTACAGGTGTAGCAGTTCGAAGGGGTGTCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACGATGCTAGTCGTCACTTACTCCTCCGACCACAACCATCCCTGGCCACCTTCTAGAAACCACGCCAGGCCCACCAAAAAACCTGAACCGGTTCCGGACCCGGTCGAACCGGAGGAGAAGTTCGCGGACGAGTCCATGATAACAACCGCGGAAGAATTGGGGTGGCTGGGGGAGATGGAAGCGACGTCGTCCACGGTTCTCGAAAGCCCGTTTATGGCTACGACGTACCATGCTGACGTGGCGCTGATTCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGACCTCGGAGAGCTGCCGGAGTGCTCGGTAGTGTTCCGGCAGGGGCTGCTGGCGGAGCGGCGGCGGTACACGGCGCCGTGGTGTGGGACCACAAGTTGA

Predicted protein sequences of Glyma05g29310

Limit To All Plant Sequences

>Glyma05g29310.1   sequence type=predicted peptide   gene model=Glyma05g29310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSKFRKKNRNVNSYTSEQDQDTDIAQENLAESPPSSTVFNIDGLVPSPTSSSKRRRAIQKRVVQIPMKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPPSRNHARPTKKPEPVPDPVEPEEKFADESMITTAEELGWLGEMEATSSTVLESPFMATTYHADVALIPMREEDESLFADLGELPECSVVFRQGLLAERRRYTAPWCGTTS*

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